Hs03701744_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136676021 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC007269.1			AAH07269.1
	BC019292.1			AAH19292.1
	BF347518.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	EGFL7 HSPC324 MIR126 AGPAT2 LINC01451
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	MIR4673 EGFL7 NALT1 FAM69B MIR4674 SNHG7 NOTCH1 HSPC324 MIR126 AGPAT2 LINC01451
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	LOC100128593 EGFL7 LCN6 SNORA17A FAM69B LCN8 SNHG7 MIR126 AGPAT2 LINC01451 LCN15 SNORA17B MIR6722 HSPC324 LCN10
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	LOC100128593 CCDC183 CARD9 MAN1B1-AS1 SNAPC4 SEC16A LCN8 AGPAT2 INPP5E MIR3621 SAPCD2 CLIC3 PTGDS MAMDC4 MIR6722 MIR4292 NPDC1 FUT7 SDCCAG3 GRIN1 MIR4673 MIR4479 LCN6 C9orf163 RABL6 EDF1 UAP1L1 LINC01451 LCN15 C8G C9orf139 TMEM141 C9orf142 NOTCH1 HSPC324 LCN12 C9orf172 DNLZ FAM69B TMEM210 CCDC183-AS1 SNORA17B MIR4674 LRRC26 TRAF2 DPP7 ABCA2 LOC101930307 LCN10 PRR31 EGFL7 FBXW5 NALT1 SNORA17A SNHG7 MIR126 MAN1B1 ENTPD2 PHPT1 LCNL1 PMPCA
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	LOC100128593 CCDC183 DNLZ CARD9 SNAPC4 FAM69B GPSM1 SEC16A LCN8 AGPAT2 CCDC183-AS1 INPP5E SNORA17B MIR4674 TRAF2 MAMDC4 MIR6722 MIR4292 LCN10 SDCCAG3 MIR4673 EGFL7 MIR4479 NALT1 LCN6 SNORA17A C9orf163 RABL6 SNHG7 EDF1 MIR126 LINC01451 LCN15 TMEM141 PHPT1 NOTCH1 HSPC324 C9orf172 PMPCA
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	LOC100128593 MIR4673 EGFL7 NALT1 LCN6 SNORA17A FAM69B LCN8 SNHG7 MIR126 AGPAT2 LINC01451 LCN15 SNORA17B MIR4674 NOTCH1 MIR6722 HSPC324 LCN10
dgv955n27	Chr.9:136583078 - 136676165 on Build GRCh38	Loss	EGFL7 HSPC324 MIR126 AGPAT2 LINC01451
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	EGFL7 FAM69B HSPC324 MIR126 AGPAT2 LINC01451
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	EGFL7 FAM69B SNHG7 HSPC324 MIR126 AGPAT2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	LOC100128593 CCDC183 MAN1B1-AS1 TPRN LCN8 AGPAT2 MIR3621 SAPCD2 CLIC3 PTGDS MAMDC4 MIR6722 MIR4292 NPDC1 SLC34A3 FUT7 GRIN1 TOR4A MIR4479 LCN6 RABL6 EDF1 UAP1L1 NRARP LINC01451 LCN15 C8G ANAPC2 C9orf139 RNF224 TUBB4B TMEM203 TMEM141 C9orf142 HSPC324 LCN12 C9orf172 NELFB FAM69B TMEM210 FAM166A C9orf173-AS1 CCDC183-AS1 SNORA17B NDOR1 LRRC26 TRAF2 DPP7 ABCA2 LOC101930307 LCN10 STPG3 PRR31 EXD3 EGFL7 RNF208 FBXW5 SNORA17A SNHG7 MIR126 MAN1B1 ENTPD2 SSNA1 CYSRT1 PHPT1 LCNL1

More Information

Additional Information:

For this assay, SNP(s) [rs80182119] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity