Hs03701744_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136676021 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC007269.1			AAH07269.1
	BC019292.1			AAH19292.1
	BF347518.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	HSPC324 AGPAT2 EGFL7 LINC01451 MIR126
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	MIR4673 NALT1 MIR4674 SNHG7 NOTCH1 HSPC324 AGPAT2 EGFL7 LINC01451 FAM69B MIR126
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	LOC100128593 AGPAT2 LCN8 LINC01451 FAM69B SNORA17A LCN6 SNHG7 HSPC324 LCN15 EGFL7 LCN10 MIR6722 MIR126 SNORA17B
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	CARD9 NALT1 C9orf172 LINC01451 FAM69B MAMDC4 PMPCA PHPT1 MIR4673 SNHG7 NOTCH1 HSPC324 LCN15 LCN10 MIR126 C9orf163 SNAPC4 LOC100128593 MIR4479 AGPAT2 EDF1 LCN8 INPP5E SNORA17A GPSM1 TMEM141 LCN6 MIR4292 SDCCAG3 SEC16A TRAF2 CCDC183 MIR4674 RABL6 CCDC183-AS1 EGFL7 DNLZ MIR6722 SNORA17B
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	NALT1 C9orf172 ABCA2 LINC01451 FAM69B MAMDC4 MAN1B1 MIR4673 GRIN1 SNHG7 LCN12 CLIC3 LCN10 C9orf142 SNAPC4 MIR4479 SAPCD2 MIR3621 C9orf139 TMEM210 EDF1 SNORA17A SEC16A TRAF2 CCDC183-AS1 EGFL7 DNLZ MIR6722 LCNL1 SNORA17B CARD9 PMPCA MAN1B1-AS1 PHPT1 FBXW5 NOTCH1 HSPC324 LCN15 MIR126 UAP1L1 C9orf163 PTGDS NPDC1 LOC100128593 LOC101930307 DPP7 AGPAT2 LCN8 INPP5E TMEM141 LRRC26 LCN6 MIR4292 SDCCAG3 CCDC183 FUT7 MIR4674 RABL6 PRR31 ENTPD2 C8G
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	LOC100128593 NALT1 AGPAT2 LCN8 LINC01451 FAM69B SNORA17A LCN6 MIR4673 MIR4674 SNHG7 NOTCH1 HSPC324 LCN15 EGFL7 LCN10 MIR6722 MIR126 SNORA17B
dgv955n27	Chr.9:136583078 - 136676165 on Build GRCh38	Loss	HSPC324 AGPAT2 EGFL7 LINC01451 MIR126
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	HSPC324 AGPAT2 EGFL7 LINC01451 FAM69B MIR126
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	SNHG7 HSPC324 AGPAT2 EGFL7 FAM69B MIR126
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	SLC34A3 TPRN C9orf172 CYSRT1 ABCA2 EXD3 RNF208 LINC01451 FAM69B MAMDC4 MAN1B1 NRARP GRIN1 SNHG7 LCN12 SSNA1 CLIC3 ANAPC2 LCN10 NDOR1 C9orf142 MIR4479 SAPCD2 TOR4A MIR3621 C9orf139 TMEM210 EDF1 SNORA17A TRAF2 NELFB FAM166A CCDC183-AS1 EGFL7 MIR6722 LCNL1 SNORA17B TUBB4B MAN1B1-AS1 PHPT1 FBXW5 TMEM203 HSPC324 LCN15 MIR126 UAP1L1 PTGDS NPDC1 LOC100128593 LOC101930307 DPP7 AGPAT2 STPG3 LCN8 TMEM141 LRRC26 LCN6 MIR4292 CCDC183 FUT7 RABL6 PRR31 ENTPD2 C9orf173-AS1 RNF224 C8G

More Information

Additional Information:

For this assay, SNP(s) [rs80182119] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity