Hs03703096_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136674079 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC007269.1			AAH07269.1
	BC019292.1			AAH19292.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	LINC01451 MIR126 EGFL7 AGPAT2 HSPC324
esv32979	Chr.9:136666564 - 136674090 on Build GRCh38	Gain	MIR126 EGFL7 AGPAT2
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	LINC01451 MIR126 NALT1 EGFL7 AGPAT2 MIR4673 SNHG7 MIR4674 FAM69B HSPC324 NOTCH1
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	LINC01451 SNORA17A EGFL7 MIR6722 MIR126 LOC100128593 LCN8 AGPAT2 LCN15 SNHG7 LCN10 SNORA17B FAM69B HSPC324 LCN6
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	SDCCAG3 LINC01451 TRAF2 NALT1 EGFL7 MIR4674 CCDC183 TMEM141 C9orf163 MIR126 CCDC183-AS1 SNAPC4 EDF1 CARD9 SNORA17B DNLZ PMPCA FAM69B NOTCH1 GPSM1 MIR4479 SNORA17A MIR4673 MIR4292 MIR6722 C9orf172 SEC16A MAMDC4 LOC100128593 LCN8 PHPT1 AGPAT2 LCN15 INPP5E SNHG7 RABL6 LCN10 HSPC324 LCN6
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	LINC01451 TRAF2 NALT1 FUT7 TMEM210 LRRC26 CCDC183 CCDC183-AS1 PTGDS MAN1B1-AS1 MAN1B1 C9orf139 FAM69B NOTCH1 SNORA17A ABCA2 MIR4292 MIR6722 C9orf142 C9orf172 MIR3621 GRIN1 PRR31 LCN8 LCN15 NPDC1 SAPCD2 RABL6 LCN10 HSPC324 LCN6 SDCCAG3 EGFL7 ENTPD2 MIR4674 TMEM141 C9orf163 MIR126 SNAPC4 FBXW5 EDF1 CARD9 SNORA17B DNLZ PMPCA MIR4479 CLIC3 MIR4673 UAP1L1 C8G SEC16A MAMDC4 LOC100128593 PHPT1 DPP7 AGPAT2 INPP5E LOC101930307 SNHG7 LCNL1 LCN12
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	LINC01451 SNORA17A NALT1 EGFL7 MIR4673 MIR4674 MIR6722 MIR126 LOC100128593 LCN8 AGPAT2 LCN15 SNHG7 LCN10 SNORA17B FAM69B HSPC324 NOTCH1 LCN6
dgv955n27	Chr.9:136583078 - 136676165 on Build GRCh38	Loss	LINC01451 MIR126 EGFL7 AGPAT2 HSPC324
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	LINC01451 MIR126 EGFL7 AGPAT2 FAM69B HSPC324
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	MIR126 EGFL7 AGPAT2 SNHG7 FAM69B HSPC324
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	LINC01451 TRAF2 FUT7 TMEM210 C9orf173-AS1 LRRC26 CCDC183 CCDC183-AS1 PTGDS MAN1B1-AS1 RNF224 TUBB4B MAN1B1 TPRN SLC34A3 C9orf139 FAM69B NDOR1 SNORA17A ABCA2 MIR4292 STPG3 MIR6722 TOR4A C9orf142 C9orf172 MIR3621 GRIN1 RNF208 PRR31 LCN8 LCN15 CYSRT1 NPDC1 SAPCD2 RABL6 LCN10 HSPC324 LCN6 EGFL7 ENTPD2 TMEM141 MIR126 TMEM203 FBXW5 EDF1 NELFB SNORA17B NRARP MIR4479 CLIC3 UAP1L1 SSNA1 EXD3 C8G ANAPC2 MAMDC4 LOC100128593 PHPT1 DPP7 AGPAT2 FAM166A LOC101930307 SNHG7 LCNL1 LCN12

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity