Hs03708426_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136682689 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	HSPC324 EGFL7 LINC01451 AGPAT2 MIR126
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	MIR4673 SNHG7 HSPC324 EGFL7 LINC01451 NOTCH1 MIR4674 AGPAT2 MIR126 FAM69B NALT1
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	LCN6 HSPC324 EGFL7 SNORA17A AGPAT2 LCN10 LCN8 LCN15 SNHG7 LOC100128593 LINC01451 MIR126 FAM69B SNORA17B MIR6722
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	PHPT1 LCN6 HSPC324 TMEM141 MIR4292 SNORA17A AGPAT2 LCN8 LCN15 LOC100128593 EDF1 CCDC183-AS1 GPSM1 MIR126 PMPCA NALT1 CCDC183 DNLZ MIR4673 SNAPC4 EGFL7 CARD9 C9orf163 INPP5E SEC16A MIR4674 C9orf172 LCN10 MIR4479 RABL6 SNHG7 MAMDC4 SDCCAG3 TRAF2 LINC01451 NOTCH1 FAM69B SNORA17B MIR6722
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	PHPT1 C9orf142 HSPC324 FUT7 SNORA17A LRRC26 C8G LCN8 EDF1 TMEM210 UAP1L1 CLIC3 DPP7 PMPCA CCDC183 MIR4673 SNAPC4 PTGDS INPP5E MAN1B1 MIR4479 RABL6 MAMDC4 SDCCAG3 TRAF2 PRR31 FAM69B LCN6 TMEM141 MIR4292 GRIN1 AGPAT2 C9orf139 LCN15 LOC100128593 CCDC183-AS1 MIR126 NALT1 DNLZ LCNL1 MIR3621 EGFL7 CARD9 C9orf163 ABCA2 SEC16A MIR4674 C9orf172 LCN10 SNHG7 SAPCD2 MAN1B1-AS1 LOC101930307 NPDC1 LINC01451 NOTCH1 ENTPD2 SNORA17B MIR6722 FBXW5 LCN12
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	MIR4673 LCN6 HSPC324 EGFL7 MIR4674 SNORA17A AGPAT2 LCN10 LCN8 LCN15 SNHG7 LOC100128593 LINC01451 NOTCH1 MIR126 FAM69B SNORA17B MIR6722 NALT1
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	HSPC324 EGFL7 LINC01451 AGPAT2 MIR126 FAM69B
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	SNHG7 HSPC324 EGFL7 AGPAT2 MIR126 FAM69B
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	FAM166A PHPT1 C9orf142 STPG3 HSPC324 FUT7 TUBB4B SNORA17A LRRC26 C8G LCN8 EDF1 RNF224 TMEM210 UAP1L1 CLIC3 DPP7 CCDC183 PTGDS MAN1B1 CYSRT1 NRARP MIR4479 RABL6 MAMDC4 TRAF2 ANAPC2 EXD3 PRR31 NELFB TMEM203 FAM69B LCN6 TMEM141 MIR4292 GRIN1 AGPAT2 C9orf139 TOR4A LCN15 LOC100128593 C9orf173-AS1 CCDC183-AS1 SLC34A3 MIR126 LCNL1 MIR3621 EGFL7 ABCA2 TPRN C9orf172 LCN10 NDOR1 SSNA1 SNHG7 SAPCD2 RNF208 MAN1B1-AS1 LOC101930307 NPDC1 LINC01451 ENTPD2 SNORA17B MIR6722 FBXW5 LCN12

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity