Hs03708426_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136682689 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	HSPC324 AGPAT2 MIR126 LINC01451 EGFL7
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	HSPC324 MIR4673 SNHG7 FAM69B NALT1 MIR4674 AGPAT2 MIR126 NOTCH1 LINC01451 EGFL7
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	FAM69B LCN10 MIR126 LCN8 LOC100128593 LCN6 SNORA17B EGFL7 HSPC324 SNORA17A SNHG7 LCN15 AGPAT2 MIR6722 LINC01451
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	DNLZ C9orf163 ABCA2 PHPT1 PMPCA TRAF2 LOC100128593 MAN1B1 NOTCH1 SNORA17B EGFL7 MIR4292 LRRC26 MIR4674 GRIN1 LINC01451 C9orf172 TMEM141 MIR126 LCN8 DPP7 C8G PTGDS CLIC3 PRR31 LCN15 EDF1 MIR6722 MIR4479 C9orf142 MIR4673 ENTPD2 C9orf139 NALT1 MIR3621 FBXW5 LCN12 HSPC324 SNORA17A MAN1B1-AS1 RABL6 TMEM210 INPP5E LOC101930307 CCDC183 AGPAT2 NPDC1 SNAPC4 SAPCD2 FAM69B LCNL1 LCN10 LCN6 MAMDC4 SNHG7 FUT7 UAP1L1 CCDC183-AS1 SEC16A CARD9 SDCCAG3
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR4673 DNLZ C9orf163 PHPT1 NALT1 PMPCA TRAF2 LOC100128593 NOTCH1 SNORA17B EGFL7 MIR4292 HSPC324 SNORA17A RABL6 INPP5E MIR4674 CCDC183 AGPAT2 SNAPC4 LINC01451 C9orf172 FAM69B TMEM141 LCN10 MIR126 LCN8 LCN6 GPSM1 MAMDC4 SNHG7 CCDC183-AS1 LCN15 EDF1 SEC16A MIR6722 MIR4479 CARD9 SDCCAG3
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	MIR4673 FAM69B NALT1 LCN10 MIR126 LCN8 LOC100128593 LCN6 NOTCH1 SNORA17B EGFL7 HSPC324 SNORA17A SNHG7 LCN15 MIR4674 AGPAT2 MIR6722 LINC01451
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	HSPC324 FAM69B AGPAT2 MIR126 LINC01451 EGFL7
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	HSPC324 SNHG7 FAM69B AGPAT2 MIR126 EGFL7
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	ABCA2 PHPT1 TRAF2 LOC100128593 NELFB MAN1B1 CYSRT1 SNORA17B EGFL7 MIR4292 LRRC26 RNF208 GRIN1 SSNA1 EXD3 LINC01451 TMEM203 C9orf172 STPG3 TUBB4B TMEM141 MIR126 LCN8 DPP7 C8G PTGDS CLIC3 PRR31 LCN15 TPRN EDF1 MIR6722 MIR4479 C9orf142 ENTPD2 C9orf139 ANAPC2 MIR3621 FBXW5 FAM166A LCN12 HSPC324 SNORA17A MAN1B1-AS1 RABL6 TMEM210 LOC101930307 CCDC183 AGPAT2 NPDC1 SLC34A3 SAPCD2 FAM69B LCNL1 RNF224 C9orf173-AS1 LCN10 LCN6 TOR4A MAMDC4 SNHG7 FUT7 UAP1L1 CCDC183-AS1 NRARP NDOR1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity