Hs03709897_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136683667 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	EGFL7 MIR126 LINC01451 HSPC324 AGPAT2
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	EGFL7 MIR126 NALT1 LINC01451 FAM69B MIR4673 MIR4674 NOTCH1 HSPC324 AGPAT2 SNHG7
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	SNORA17B EGFL7 MIR126 LOC100128593 HSPC324 LCN6 AGPAT2 SNHG7 LCN8 LCN10 SNORA17A MIR6722 LINC01451 FAM69B LCN15
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR4292 MAMDC4 TMEM141 CCDC183 PMPCA LOC100128593 LCN6 AGPAT2 SNHG7 INPP5E CCDC183-AS1 SEC16A LCN10 SNORA17A NALT1 SNAPC4 LINC01451 FAM69B PHPT1 MIR4674 DNLZ TRAF2 CARD9 SNORA17B SDCCAG3 EGFL7 MIR126 RABL6 MIR4673 NOTCH1 HSPC324 LCN8 MIR4479 C9orf172 C9orf163 EDF1 GPSM1 MIR6722 LCN15
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	PTGDS MIR4292 LCN12 UAP1L1 DPP7 PMPCA LOC100128593 CLIC3 LCN6 AGPAT2 SNHG7 MAN1B1-AS1 TMEM210 LOC101930307 INPP5E SEC16A SNORA17A SNAPC4 FAM69B PHPT1 MIR4674 LCNL1 DNLZ CARD9 SNORA17B C8G ENTPD2 SDCCAG3 LRRC26 MIR126 SAPCD2 PRR31 MIR4673 HSPC324 GRIN1 MIR4479 EDF1 MIR3621 MIR6722 NPDC1 MAMDC4 TMEM141 CCDC183 CCDC183-AS1 C9orf142 LCN10 NALT1 C9orf139 LINC01451 FBXW5 FUT7 TRAF2 EGFL7 RABL6 NOTCH1 LCN8 C9orf172 C9orf163 ABCA2 MAN1B1 LCN15
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	SNORA17B EGFL7 MIR126 LOC100128593 MIR4673 NOTCH1 HSPC324 LCN6 AGPAT2 SNHG7 LCN8 LCN10 SNORA17A NALT1 MIR6722 LINC01451 FAM69B MIR4674 LCN15
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	EGFL7 MIR126 LINC01451 FAM69B HSPC324 AGPAT2
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	EGFL7 MIR126 FAM69B HSPC324 AGPAT2 SNHG7
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	PTGDS MIR4292 LCN12 TMEM203 UAP1L1 DPP7 LOC100128593 CLIC3 LCN6 AGPAT2 SNHG7 MAN1B1-AS1 TMEM210 LOC101930307 NRARP RNF208 ANAPC2 FAM166A SNORA17A FAM69B PHPT1 TOR4A STPG3 LCNL1 TPRN SNORA17B TUBB4B C8G ENTPD2 NDOR1 LRRC26 MIR126 SAPCD2 PRR31 HSPC324 GRIN1 MIR4479 EDF1 MIR3621 SLC34A3 MIR6722 CYSRT1 NPDC1 EXD3 MAMDC4 TMEM141 CCDC183 CCDC183-AS1 C9orf142 LCN10 C9orf173-AS1 C9orf139 NELFB LINC01451 SSNA1 FBXW5 FUT7 TRAF2 EGFL7 RABL6 LCN8 C9orf172 ABCA2 MAN1B1 LCN15 RNF224

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity