Hs03713386_cn

• Gene Symbol: SAPCD2
• Assay Reference Genome Location: Chr.9:137068158 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 89958
• Gene Name: suppressor APC domain containing 2
• Gene Aliases: C9orf140, p42.3
• Location: Chr.9:137062127-137070576 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SAPCD2	NM_178448.3			NP_848543.2
	XM_011519180.2			XP_011517482.1
	BC048267.1			AAH48267.1
	BX332104.2
	DQ150361.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	ENTPD2 PRR31 C9orf142 FUT7 LRRC26 ABCA2 PTGDS GRIN1 NPDC1 TMEM210 DPP7 LCNL1 CLIC3 MIR3621 MAN1B1 C9orf139 LOC101930307 SAPCD2 UAP1L1 MAN1B1-AS1
nsv831761	Chr.9:137049674 - 137166473 on Build GRCh38	Loss	ENTPD2 GRIN1 DPP7 MAN1B1 LOC101930307 SAPCD2 UAP1L1 MAN1B1-AS1
nsv616006	Chr.9:137057859 - 137083633 on Build GRCh38	Loss	SAPCD2 UAP1L1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	PRR31 PHPT1 RNF208 FUT7 SSNA1 ENTPD8 NOXA1 NSMF CCDC183 MIR4479 TMEM203 TUBB4B MIR3621 TOR4A SLC34A3 MIR4292 MAN1B1-AS1 ENTPD2 RABL6 C9orf142 EDF1 CYSRT1 C8G NDOR1 PNPLA7 RNF224 FBXW5 TPRN GRIN1 TMEM210 DPP7 LCNL1 STPG3 CLIC3 MAN1B1 ANAPC2 C9orf139 LOC101930307 UAP1L1 C9orf172 TRAF2 CCDC183-AS1 FAM166A EXD3 LRRC26 MIR7114 ABCA2 PTGDS NPDC1 NRARP C9orf173-AS1 MAMDC4 SAPCD2 NELFB LCN12
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	ENTPD2 PRR31 C9orf142 FUT7 ABCA2 PTGDS C8G NPDC1 DPP7 LCNL1 CLIC3 MAN1B1 C9orf139 LOC101930307 SAPCD2 LCN12 UAP1L1 MAN1B1-AS1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	PRR31 AGPAT2 PHPT1 FUT7 LCN10 SEC16A LINC01451 CCDC183 INPP5E MIR4479 MIR3621 MIR4292 LCN8 MAN1B1-AS1 ENTPD2 RABL6 C9orf142 EDF1 DNLZ SNAPC4 C8G MIR126 MIR4674 NOTCH1 LOC100128593 FBXW5 MIR6722 SNORA17B EGFL7 SNORA17A PMPCA LCN6 GRIN1 TMEM210 SNHG7 DPP7 LCNL1 CLIC3 MAN1B1 C9orf139 LOC101930307 CARD9 UAP1L1 TMEM141 C9orf172 FAM69B TRAF2 CCDC183-AS1 C9orf163 LRRC26 ABCA2 NALT1 SDCCAG3 PTGDS NPDC1 HSPC324 MIR4673 MAMDC4 SAPCD2 LCN12 LCN15
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	ENTPD2 FUT7 LRRC26 SSNA1 GRIN1 NPDC1 TMEM210 DPP7 MIR3621 MAN1B1 ANAPC2 C9orf139 LOC101930307 SAPCD2 UAP1L1 MAN1B1-AS1
nsv616005	Chr.9:137036493 - 137173890 on Build GRCh38	Loss	ENTPD2 LRRC26 GRIN1 NPDC1 TMEM210 DPP7 MIR3621 MAN1B1 C9orf139 LOC101930307 SAPCD2 UAP1L1 MAN1B1-AS1
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	PRR31 AGPAT2 PHPT1 RNF208 FUT7 SSNA1 LCN10 LINC01451 CCDC183 MIR4479 TMEM203 TUBB4B MIR3621 TOR4A SLC34A3 MIR4292 LCN8 MAN1B1-AS1 ENTPD2 RABL6 C9orf142 EDF1 CYSRT1 C8G MIR126 NDOR1 LOC100128593 RNF224 FBXW5 MIR6722 SNORA17B EGFL7 SNORA17A TPRN LCN6 GRIN1 TMEM210 SNHG7 DPP7 LCNL1 STPG3 CLIC3 MAN1B1 ANAPC2 C9orf139 LOC101930307 UAP1L1 TMEM141 C9orf172 FAM69B TRAF2 CCDC183-AS1 FAM166A EXD3 LRRC26 ABCA2 PTGDS NPDC1 NRARP HSPC324 C9orf173-AS1 MAMDC4 SAPCD2 NELFB LCN12 LCN15
nsv982354	Chr.9:137057355 - 137073859 on Build GRCh38	Duplication	SAPCD2

More Information

Additional Information:

For this assay, SNP(s) [rs74573601] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation