Hs03714556_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136677904 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	LINC01451 MIR126 HSPC324 EGFL7 AGPAT2
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	LINC01451 NALT1 MIR126 MIR4674 HSPC324 NOTCH1 SNHG7 EGFL7 MIR4673 FAM69B AGPAT2
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	LCN6 HSPC324 LCN8 MIR6722 AGPAT2 LCN15 LINC01451 MIR126 SNHG7 LOC100128593 EGFL7 LCN10 FAM69B SNORA17B SNORA17A
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	PMPCA MIR4292 MIR4479 EDF1 C9orf172 PHPT1 DNLZ RABL6 MIR6722 TMEM141 SDCCAG3 MAMDC4 MIR4674 NOTCH1 SNHG7 EGFL7 MIR4673 SNORA17B SNORA17A CCDC183-AS1 TRAF2 LCN6 HSPC324 LCN8 SEC16A SNAPC4 AGPAT2 LCN15 INPP5E LINC01451 NALT1 CARD9 MIR126 C9orf163 CCDC183 LOC100128593 LCN10 GPSM1 FAM69B
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	FUT7 PMPCA ABCA2 MIR4292 MAN1B1-AS1 MIR4479 PHPT1 DNLZ MIR6722 TMEM141 DPP7 MAMDC4 MIR4674 NOTCH1 MIR4673 SNORA17B SNORA17A CCDC183-AS1 TRAF2 PRR31 UAP1L1 LCN12 HSPC324 LCN8 SNAPC4 LCN15 MIR3621 INPP5E LINC01451 MIR126 GRIN1 FAM69B EDF1 C9orf172 RABL6 ENTPD2 FBXW5 C9orf142 SDCCAG3 C9orf139 LCNL1 SNHG7 EGFL7 TMEM210 LCN6 SEC16A SAPCD2 AGPAT2 NALT1 CLIC3 NPDC1 CARD9 LOC101930307 C9orf163 C8G CCDC183 MAN1B1 LOC100128593 LRRC26 PTGDS LCN10
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	LCN6 HSPC324 LCN8 MIR6722 AGPAT2 LCN15 LINC01451 NALT1 MIR126 MIR4674 NOTCH1 SNHG7 LOC100128593 EGFL7 LCN10 MIR4673 FAM69B SNORA17B SNORA17A
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	LINC01451 MIR126 HSPC324 EGFL7 FAM69B AGPAT2
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	MIR126 HSPC324 SNHG7 EGFL7 FAM69B AGPAT2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	SLC34A3 FUT7 ABCA2 MIR4292 MAN1B1-AS1 MIR4479 PHPT1 MIR6722 TMEM141 DPP7 MAMDC4 TPRN SNORA17B SNORA17A CCDC183-AS1 TRAF2 PRR31 TMEM203 UAP1L1 LCN12 HSPC324 LCN8 NELFB LCN15 MIR3621 LINC01451 STPG3 TOR4A SSNA1 ANAPC2 MIR126 RNF224 RNF208 GRIN1 FAM69B EDF1 C9orf172 RABL6 ENTPD2 FBXW5 C9orf142 C9orf173-AS1 NDOR1 EXD3 C9orf139 LCNL1 SNHG7 EGFL7 TMEM210 TUBB4B NRARP LCN6 FAM166A SAPCD2 AGPAT2 CYSRT1 CLIC3 NPDC1 LOC101930307 C8G CCDC183 MAN1B1 LOC100128593 LRRC26 PTGDS LCN10

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity