Hs03714556_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136677904 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	MIR126 AGPAT2 LINC01451 EGFL7 HSPC324
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	FAM69B MIR126 MIR4673 NOTCH1 NALT1 SNHG7 AGPAT2 MIR4674 LINC01451 EGFL7 HSPC324
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	MIR6722 FAM69B LCN8 MIR126 SNORA17A LCN10 LOC100128593 SNHG7 AGPAT2 HSPC324 SNORA17B LCN6 LCN15 LINC01451 EGFL7
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MAN1B1-AS1 SNORA17A NPDC1 NALT1 LOC100128593 MIR4479 SNAPC4 CCDC183-AS1 CCDC183 SNORA17B C8G LCN6 PTGDS C9orf163 PRR31 ENTPD2 C9orf172 MAN1B1 C9orf139 LCN12 AGPAT2 DNLZ INPP5E TMEM141 LCNL1 PMPCA CLIC3 MIR4674 LINC01451 EGFL7 PHPT1 MIR6722 FAM69B LCN8 SAPCD2 SDCCAG3 MIR4673 LOC101930307 LCN10 UAP1L1 SNHG7 ABCA2 MAMDC4 LCN15 SEC16A LRRC26 EDF1 NOTCH1 FBXW5 MIR126 FUT7 TMEM210 HSPC324 C9orf142 RABL6 TRAF2 DPP7 MIR3621 MIR4292 CARD9 GRIN1
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR6722 FAM69B LCN8 SDCCAG3 MIR4673 SNORA17A LCN10 NALT1 LOC100128593 MIR4479 SNAPC4 CCDC183-AS1 SNHG7 CCDC183 SNORA17B LCN6 MAMDC4 LCN15 GPSM1 SEC16A EDF1 NOTCH1 C9orf163 C9orf172 MIR126 AGPAT2 HSPC324 RABL6 TRAF2 DNLZ INPP5E TMEM141 MIR4292 PMPCA CARD9 MIR4674 LINC01451 EGFL7 PHPT1
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	MIR6722 FAM69B LCN8 MIR126 MIR4673 SNORA17A LCN10 NALT1 LOC100128593 SNHG7 AGPAT2 HSPC324 SNORA17B LCN6 LCN15 NOTCH1 MIR4674 LINC01451 EGFL7
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	FAM69B MIR126 AGPAT2 LINC01451 EGFL7 HSPC324
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	FAM69B MIR126 SNHG7 AGPAT2 EGFL7 HSPC324
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	MAN1B1-AS1 SNORA17A NPDC1 LOC100128593 FAM166A MIR4479 CCDC183-AS1 CCDC183 SNORA17B C8G LCN6 NDOR1 PTGDS PRR31 ENTPD2 C9orf172 STPG3 C9orf173-AS1 MAN1B1 C9orf139 LCN12 AGPAT2 NRARP TMEM141 LCNL1 CLIC3 LINC01451 EGFL7 PHPT1 TMEM203 MIR6722 FAM69B NELFB LCN8 SAPCD2 LOC101930307 LCN10 UAP1L1 SNHG7 ABCA2 TUBB4B MAMDC4 SLC34A3 LCN15 SSNA1 LRRC26 EDF1 FBXW5 TOR4A MIR126 FUT7 EXD3 TMEM210 HSPC324 ANAPC2 CYSRT1 TPRN C9orf142 RNF224 RABL6 TRAF2 RNF208 DPP7 MIR3621 MIR4292 GRIN1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity