Hs03715767_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136675004 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC007269.1			AAH07269.1
	BC019292.1			AAH19292.1
	BF347518.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	HSPC324 EGFL7 LINC01451 AGPAT2 MIR126
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	HSPC324 SNHG7 NOTCH1 NALT1 MIR4674 MIR4673 FAM69B EGFL7 LINC01451 AGPAT2 MIR126
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	SNORA17A LOC100128593 MIR6722 LCN6 LCN15 FAM69B EGFL7 LINC01451 MIR126 HSPC324 SNORA17B SNHG7 AGPAT2 LCN8 LCN10
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	LOC100128593 MIR6722 TMEM210 LCN15 PMPCA MIR4292 C9orf172 HSPC324 SAPCD2 ABCA2 MIR4479 C9orf139 TMEM141 NALT1 FUT7 PHPT1 LCN6 GRIN1 SEC16A FAM69B CARD9 TRAF2 DPP7 LCNL1 SNHG7 MIR4674 INPP5E LCN12 LCN8 SNORA17A PRR31 MIR4673 DNLZ ENTPD2 PTGDS C9orf163 FBXW5 LOC101930307 NOTCH1 RABL6 CLIC3 MAN1B1 LRRC26 MAMDC4 C8G CCDC183-AS1 MAN1B1-AS1 EGFL7 SNAPC4 LINC01451 NPDC1 EDF1 MIR126 SDCCAG3 MIR3621 SNORA17B CCDC183 C9orf142 UAP1L1 AGPAT2 LCN10
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	SNORA17A LOC100128593 MIR6722 LCN15 PMPCA MIR4673 MIR4292 DNLZ C9orf172 GPSM1 HSPC324 C9orf163 MIR4479 TMEM141 NOTCH1 NALT1 RABL6 MAMDC4 PHPT1 LCN6 SEC16A CCDC183-AS1 FAM69B EGFL7 SNAPC4 CARD9 TRAF2 LINC01451 EDF1 MIR126 SDCCAG3 SNORA17B SNHG7 CCDC183 MIR4674 INPP5E AGPAT2 LCN8 LCN10
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	SNORA17A LOC100128593 MIR6722 LCN6 LCN15 MIR4673 FAM69B EGFL7 LINC01451 MIR126 HSPC324 SNORA17B SNHG7 NOTCH1 NALT1 MIR4674 AGPAT2 LCN8 LCN10
dgv955n27	Chr.9:136583078 - 136676165 on Build GRCh38	Loss	HSPC324 EGFL7 LINC01451 AGPAT2 MIR126
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	HSPC324 FAM69B EGFL7 LINC01451 AGPAT2 MIR126
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	HSPC324 SNHG7 FAM69B EGFL7 AGPAT2 MIR126
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	EXD3 LOC100128593 MIR6722 TMEM210 LCN15 MIR4292 TUBB4B C9orf172 HSPC324 CYSRT1 SAPCD2 ANAPC2 ABCA2 MIR4479 RNF224 C9orf139 TPRN TMEM141 FUT7 PHPT1 LCN6 GRIN1 FAM69B STPG3 FAM166A TRAF2 SLC34A3 TMEM203 DPP7 TOR4A LCNL1 SNHG7 NELFB LCN12 LCN8 RNF208 SNORA17A NDOR1 PRR31 ENTPD2 PTGDS FBXW5 LOC101930307 NRARP RABL6 CLIC3 MAN1B1 LRRC26 MAMDC4 SSNA1 C8G CCDC183-AS1 MAN1B1-AS1 EGFL7 C9orf173-AS1 LINC01451 NPDC1 EDF1 MIR126 MIR3621 SNORA17B CCDC183 C9orf142 UAP1L1 AGPAT2 LCN10

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity