Hs03715767_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136675004 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC007269.1			AAH07269.1
	BC019292.1			AAH19292.1
	BF347518.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	AGPAT2 HSPC324 LINC01451 MIR126 EGFL7
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	AGPAT2 HSPC324 SNHG7 NOTCH1 LINC01451 FAM69B NALT1 MIR126 MIR4673 EGFL7 MIR4674
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	AGPAT2 SNORA17B SNORA17A FAM69B LCN6 LOC100128593 LCN15 MIR6722 LCN10 EGFL7 LCN8 HSPC324 SNHG7 LINC01451 MIR126
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	EDF1 PHPT1 MAMDC4 FAM69B TRAF2 PMPCA LOC100128593 EGFL7 DNLZ GPSM1 C9orf172 C9orf163 LCN8 SNHG7 NOTCH1 CCDC183-AS1 SDCCAG3 MIR4673 INPP5E RABL6 MIR4674 MIR4479 AGPAT2 SNORA17B CARD9 SNORA17A LCN6 LCN15 MIR6722 SEC16A LCN10 SNAPC4 TMEM141 HSPC324 LINC01451 CCDC183 NALT1 MIR126 MIR4292
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MAMDC4 LOC101930307 FBXW5 UAP1L1 TRAF2 PMPCA EGFL7 DNLZ NPDC1 C9orf172 C9orf163 FUT7 MAN1B1-AS1 SDCCAG3 MIR4673 INPP5E PTGDS MIR4674 SNORA17B C8G LCN6 LCNL1 ENTPD2 MIR6722 SEC16A LCN10 ABCA2 MAN1B1 MIR4292 MIR3621 EDF1 PHPT1 LCN12 PRR31 FAM69B GRIN1 C9orf139 LOC100128593 LCN8 SNHG7 NOTCH1 CCDC183-AS1 RABL6 TMEM210 MIR4479 AGPAT2 LRRC26 CARD9 C9orf142 SNORA17A SAPCD2 LCN15 DPP7 SNAPC4 TMEM141 HSPC324 CLIC3 LINC01451 CCDC183 NALT1 MIR126
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	AGPAT2 SNORA17B SNORA17A FAM69B LCN6 LOC100128593 LCN15 MIR6722 LCN10 EGFL7 LCN8 HSPC324 SNHG7 NOTCH1 LINC01451 NALT1 MIR126 MIR4673 MIR4674
dgv955n27	Chr.9:136583078 - 136676165 on Build GRCh38	Loss	AGPAT2 HSPC324 LINC01451 MIR126 EGFL7
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	AGPAT2 HSPC324 LINC01451 FAM69B MIR126 EGFL7
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	AGPAT2 HSPC324 SNHG7 FAM69B MIR126 EGFL7
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	CYSRT1 RNF224 MAMDC4 LOC101930307 FBXW5 UAP1L1 TRAF2 EGFL7 NPDC1 C9orf172 NRARP FUT7 MAN1B1-AS1 SLC34A3 PTGDS SNORA17B C8G SSNA1 NDOR1 LCN6 LCNL1 ENTPD2 MIR6722 LCN10 EXD3 TMEM203 ABCA2 MAN1B1 TOR4A MIR4292 MIR3621 EDF1 PHPT1 LCN12 NELFB PRR31 FAM69B GRIN1 C9orf139 LOC100128593 RNF208 LCN8 SNHG7 CCDC183-AS1 RABL6 TMEM210 STPG3 MIR4479 AGPAT2 LRRC26 C9orf142 C9orf173-AS1 SNORA17A SAPCD2 LCN15 ANAPC2 TPRN DPP7 TMEM141 HSPC324 CLIC3 LINC01451 FAM166A CCDC183 MIR126 TUBB4B

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity