Hs03715855_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136676364 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC007269.1			AAH07269.1
	BC019292.1			AAH19292.1
	BF347518.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	EGFL7 MIR126 HSPC324 AGPAT2 LINC01451
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	MIR4674 SNHG7 NALT1 FAM69B EGFL7 MIR4673 NOTCH1 MIR126 HSPC324 AGPAT2 LINC01451
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	LCN10 SNHG7 LCN15 LOC100128593 MIR126 LCN8 HSPC324 AGPAT2 MIR6722 SNORA17A FAM69B EGFL7 SNORA17B LINC01451 LCN6
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MAMDC4 LCN10 SNHG7 INPP5E NOTCH1 MIR126 LCN8 AGPAT2 RABL6 DNLZ MIR6722 CARD9 GPSM1 PHPT1 MIR4674 SNAPC4 SDCCAG3 C9orf163 PMPCA LINC01451 TRAF2 LCN6 EDF1 NALT1 LCN15 MIR4292 MIR4673 LOC100128593 HSPC324 CCDC183 SNORA17A C9orf172 FAM69B EGFL7 TMEM141 MIR4479 SNORA17B CCDC183-AS1 SEC16A
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MAMDC4 CLIC3 NOTCH1 LCN8 AGPAT2 RABL6 GRIN1 UAP1L1 C8G PHPT1 MIR4674 SDCCAG3 LCN6 PTGDS EDF1 MIR3621 ENTPD2 LCN15 MIR4673 CCDC183 SAPCD2 DPP7 FAM69B PRR31 LOC101930307 MIR4479 SNORA17B CCDC183-AS1 ABCA2 LCN10 SNHG7 INPP5E MIR126 DNLZ MIR6722 CARD9 LCN12 LCNL1 SNAPC4 C9orf163 PMPCA TMEM210 LINC01451 TRAF2 C9orf142 NALT1 LRRC26 MIR4292 LOC100128593 FUT7 HSPC324 FBXW5 C9orf139 SNORA17A MAN1B1 C9orf172 EGFL7 TMEM141 MAN1B1-AS1 SEC16A NPDC1
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	LCN10 SNHG7 NALT1 LCN15 MIR4673 LOC100128593 NOTCH1 MIR126 LCN8 HSPC324 AGPAT2 MIR6722 MIR4674 SNORA17A FAM69B EGFL7 SNORA17B LINC01451 LCN6
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	FAM69B EGFL7 MIR126 HSPC324 AGPAT2 LINC01451
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	SNHG7 FAM69B EGFL7 MIR126 HSPC324 AGPAT2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	MAMDC4 CLIC3 TMEM203 TOR4A C9orf173-AS1 LCN8 AGPAT2 RABL6 GRIN1 UAP1L1 C8G PHPT1 TUBB4B LCN6 PTGDS EDF1 MIR3621 ENTPD2 SSNA1 LCN15 EXD3 CCDC183 SAPCD2 RNF208 DPP7 FAM69B PRR31 LOC101930307 MIR4479 SNORA17B CCDC183-AS1 ANAPC2 ABCA2 LCN10 SNHG7 MIR126 MIR6722 LCN12 LCNL1 RNF224 STPG3 TMEM210 LINC01451 TRAF2 NRARP C9orf142 TPRN CYSRT1 LRRC26 MIR4292 LOC100128593 FUT7 HSPC324 NELFB FBXW5 FAM166A C9orf139 SNORA17A MAN1B1 C9orf172 EGFL7 NDOR1 TMEM141 MAN1B1-AS1 SLC34A3 NPDC1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity