Hs03715855_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136676364 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC007269.1			AAH07269.1
	BC019292.1			AAH19292.1
	BF347518.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	HSPC324 LINC01451 EGFL7 MIR126 AGPAT2
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	SNHG7 HSPC324 NOTCH1 MIR4673 LINC01451 FAM69B NALT1 EGFL7 MIR126 MIR4674 AGPAT2
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	LCN15 LOC100128593 SNORA17A LCN8 LINC01451 FAM69B LCN6 SNHG7 HSPC324 MIR6722 EGFL7 MIR126 SNORA17B LCN10 AGPAT2
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	DPP7 INPP5E TRAF2 MIR3621 LOC101930307 MIR6722 TMEM141 SNAPC4 C9orf139 PHPT1 LCN15 PTGDS SNORA17A LCN8 LCNL1 DNLZ CLIC3 PMPCA LCN6 PRR31 MIR4292 NPDC1 EGFL7 FUT7 MIR126 MAMDC4 LCN10 UAP1L1 CARD9 C9orf142 LOC100128593 CCDC183-AS1 LINC01451 MAN1B1 GRIN1 ABCA2 MIR4674 C8G SNHG7 HSPC324 MIR4673 CCDC183 SNORA17B FBXW5 MAN1B1-AS1 NOTCH1 LRRC26 TMEM210 MIR4479 FAM69B NALT1 C9orf172 SAPCD2 C9orf163 EDF1 SDCCAG3 SEC16A LCN12 ENTPD2 RABL6 AGPAT2
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	CARD9 LOC100128593 CCDC183-AS1 LINC01451 INPP5E TRAF2 MIR4674 SNHG7 HSPC324 MIR4673 MIR6722 TMEM141 SNAPC4 CCDC183 SNORA17B PHPT1 LCN15 NOTCH1 SNORA17A LCN8 MIR4479 FAM69B NALT1 C9orf172 DNLZ C9orf163 EDF1 SDCCAG3 SEC16A PMPCA LCN6 MIR4292 EGFL7 RABL6 MIR126 MAMDC4 LCN10 GPSM1 AGPAT2
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	LCN15 LOC100128593 NOTCH1 SNORA17A LCN8 LINC01451 FAM69B NALT1 MIR4674 LCN6 SNHG7 HSPC324 MIR4673 MIR6722 EGFL7 MIR126 SNORA17B LCN10 AGPAT2
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	HSPC324 LINC01451 FAM69B EGFL7 MIR126 AGPAT2
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	SNHG7 HSPC324 FAM69B EGFL7 MIR126 AGPAT2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	DPP7 TRAF2 RNF208 MIR3621 NDOR1 LOC101930307 MIR6722 TMEM141 C9orf139 PHPT1 LCN15 PTGDS SNORA17A LCN8 LCNL1 FAM166A RNF224 CLIC3 LCN6 NRARP PRR31 MIR4292 NPDC1 EGFL7 FUT7 MIR126 STPG3 MAMDC4 LCN10 UAP1L1 C9orf142 LOC100128593 CCDC183-AS1 LINC01451 NELFB MAN1B1 GRIN1 ABCA2 TMEM203 C8G SNHG7 HSPC324 EXD3 SLC34A3 CYSRT1 TOR4A TUBB4B CCDC183 SNORA17B ANAPC2 C9orf173-AS1 FBXW5 MAN1B1-AS1 LRRC26 TMEM210 MIR4479 FAM69B C9orf172 SAPCD2 EDF1 SSNA1 LCN12 ENTPD2 TPRN RABL6 AGPAT2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity