Hs03720813_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136679768 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	EGFL7 LINC01451 AGPAT2 MIR126 HSPC324
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	EGFL7 SNHG7 LINC01451 MIR4674 AGPAT2 MIR4673 NALT1 NOTCH1 FAM69B MIR126 HSPC324
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	EGFL7 LCN10 SNHG7 LINC01451 AGPAT2 LCN6 LCN15 SNORA17B LCN8 MIR6722 LOC100128593 SNORA17A FAM69B MIR126 HSPC324
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	LCN10 PMPCA TMEM141 EDF1 RABL6 LCN6 MAMDC4 SNORA17B GPSM1 MIR4292 CCDC183 LCN8 MIR4673 INPP5E FAM69B EGFL7 SNHG7 CARD9 MIR4479 SDCCAG3 LINC01451 AGPAT2 DNLZ SEC16A NOTCH1 LCN15 C9orf172 TRAF2 MIR4674 NALT1 MIR6722 LOC100128593 SNORA17A C9orf163 PHPT1 MIR126 HSPC324 CCDC183-AS1 SNAPC4
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	DPP7 LOC101930307 NPDC1 TMEM141 GRIN1 LCN6 LCN12 LCNL1 CCDC183 MAN1B1-AS1 INPP5E C9orf139 TMEM210 FAM69B EGFL7 SNHG7 CARD9 SDCCAG3 LINC01451 DNLZ NOTCH1 LCN15 SAPCD2 C9orf172 MIR4674 FBXW5 MAN1B1 MIR126 CCDC183-AS1 SNAPC4 LCN10 UAP1L1 PMPCA EDF1 C9orf142 CLIC3 ENTPD2 RABL6 FUT7 MAMDC4 SNORA17B ABCA2 MIR4292 PRR31 C8G LCN8 MIR4673 PTGDS MIR4479 AGPAT2 SEC16A LRRC26 MIR3621 TRAF2 NALT1 MIR6722 LOC100128593 SNORA17A C9orf163 PHPT1 HSPC324
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	EGFL7 LCN10 SNHG7 LINC01451 AGPAT2 LCN6 NOTCH1 LCN15 SNORA17B LCN8 MIR4674 MIR4673 NALT1 MIR6722 LOC100128593 SNORA17A FAM69B MIR126 HSPC324
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	EGFL7 LINC01451 AGPAT2 FAM69B MIR126 HSPC324
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	EGFL7 SNHG7 AGPAT2 FAM69B MIR126 HSPC324
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	DPP7 LOC101930307 NPDC1 TMEM141 NDOR1 GRIN1 LCN6 LCN12 LCNL1 CCDC183 MAN1B1-AS1 SLC34A3 CYSRT1 TPRN C9orf139 TMEM210 NELFB TMEM203 FAM69B EGFL7 SNHG7 LINC01451 STPG3 LCN15 RNF224 SAPCD2 C9orf172 SSNA1 FBXW5 MAN1B1 FAM166A MIR126 CCDC183-AS1 ANAPC2 LCN10 UAP1L1 RNF208 EDF1 C9orf142 CLIC3 ENTPD2 RABL6 EXD3 FUT7 C9orf173-AS1 MAMDC4 SNORA17B ABCA2 MIR4292 PRR31 C8G LCN8 NRARP PTGDS MIR4479 AGPAT2 LRRC26 MIR3621 TRAF2 TUBB4B MIR6722 TOR4A LOC100128593 SNORA17A PHPT1 HSPC324

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity