Hs03720813_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136679768 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	MIR126 AGPAT2 EGFL7 HSPC324 LINC01451
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	FAM69B MIR126 AGPAT2 EGFL7 NALT1 HSPC324 NOTCH1 MIR4674 SNHG7 LINC01451 MIR4673
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	LOC100128593 MIR6722 LCN15 FAM69B MIR126 EGFL7 LCN8 SNORA17B AGPAT2 SNORA17A LCN6 HSPC324 SNHG7 LINC01451 LCN10
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	UAP1L1 MIR6722 MAMDC4 LRRC26 LCN15 MAN1B1-AS1 LOC101930307 LCN8 MIR3621 SDCCAG3 C9orf142 DPP7 AGPAT2 LCN6 MIR4292 PTGDS LOC100128593 CLIC3 C8G FAM69B CCDC183 INPP5E PMPCA TMEM141 C9orf163 C9orf139 MAN1B1 RABL6 SEC16A C9orf172 MIR126 EGFL7 SNAPC4 PHPT1 EDF1 GRIN1 FBXW5 TRAF2 SNORA17A HSPC324 MIR4674 DNLZ SNHG7 LINC01451 CARD9 CCDC183-AS1 FUT7 ENTPD2 ABCA2 PRR31 NALT1 LCNL1 NPDC1 NOTCH1 MIR4673 LCN12 SNORA17B MIR4479 SAPCD2 LCN10 TMEM210
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR6722 MAMDC4 LCN15 SEC16A C9orf172 MIR126 EGFL7 LCN8 SNAPC4 PHPT1 EDF1 SDCCAG3 TRAF2 AGPAT2 SNORA17A LCN6 HSPC324 MIR4674 DNLZ SNHG7 LINC01451 CARD9 MIR4292 CCDC183-AS1 GPSM1 LOC100128593 FAM69B NALT1 NOTCH1 CCDC183 MIR4673 INPP5E PMPCA TMEM141 SNORA17B C9orf163 MIR4479 LCN10 RABL6
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	LOC100128593 MIR6722 LCN15 FAM69B MIR126 EGFL7 NALT1 NOTCH1 MIR4673 LCN8 SNORA17B AGPAT2 SNORA17A LCN6 HSPC324 MIR4674 SNHG7 LINC01451 LCN10
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	FAM69B MIR126 AGPAT2 EGFL7 HSPC324 LINC01451
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	FAM69B MIR126 AGPAT2 EGFL7 HSPC324 SNHG7
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	UAP1L1 MIR6722 MAMDC4 LRRC26 LCN15 MAN1B1-AS1 LOC101930307 LCN8 MIR3621 C9orf142 DPP7 AGPAT2 LCN6 MIR4292 PTGDS LOC100128593 CLIC3 C8G FAM69B NDOR1 CCDC183 TMEM141 CYSRT1 TUBB4B RNF208 C9orf139 SSNA1 MAN1B1 RABL6 SLC34A3 NELFB EXD3 C9orf173-AS1 C9orf172 MIR126 TMEM203 EGFL7 PHPT1 EDF1 GRIN1 FBXW5 TRAF2 FAM166A SNORA17A HSPC324 SNHG7 LINC01451 CCDC183-AS1 STPG3 TOR4A FUT7 ENTPD2 ABCA2 PRR31 LCNL1 NPDC1 LCN12 SNORA17B TPRN MIR4479 RNF224 SAPCD2 NRARP LCN10 TMEM210 ANAPC2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity