Hs03720943_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136681487 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	HSPC324 AGPAT2 LINC01451 EGFL7 MIR126
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	MIR4673 HSPC324 NALT1 FAM69B AGPAT2 SNHG7 NOTCH1 LINC01451 EGFL7 MIR4674 MIR126
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	HSPC324 LCN15 LCN6 LCN8 FAM69B AGPAT2 LINC01451 SNORA17A SNHG7 SNORA17B LCN10 MIR6722 EGFL7 LOC100128593 MIR126
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	SNAPC4 RABL6 HSPC324 FAM69B AGPAT2 TMEM141 MAMDC4 C9orf163 LINC01451 MIR4292 SNORA17A NALT1 CCDC183 MIR4479 SNORA17B NOTCH1 LCN10 MIR6722 MIR4674 CCDC183-AS1 MIR4673 LCN15 LCN6 GPSM1 INPP5E LCN8 SDCCAG3 SEC16A DNLZ CARD9 C9orf172 PHPT1 SNHG7 TRAF2 PMPCA EGFL7 LOC100128593 EDF1 MIR126
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	C8G SNAPC4 HSPC324 FAM69B AGPAT2 MAMDC4 C9orf163 NALT1 LOC101930307 CCDC183 MIR4479 NOTCH1 LCN10 MIR4674 FUT7 PTGDS FBXW5 DPP7 MIR4673 LCN15 INPP5E UAP1L1 SEC16A DNLZ CARD9 PRR31 PHPT1 C9orf142 SNHG7 ABCA2 PMPCA EGFL7 EDF1 CLIC3 RABL6 TMEM210 MAN1B1-AS1 TMEM141 LINC01451 MIR4292 MAN1B1 SNORA17A LCN12 SNORA17B MIR6722 CCDC183-AS1 LCN6 MIR3621 LCN8 C9orf139 SDCCAG3 LCNL1 ENTPD2 C9orf172 NPDC1 LRRC26 SAPCD2 TRAF2 LOC100128593 MIR126 GRIN1
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	MIR4673 HSPC324 LCN15 LCN6 LCN8 FAM69B AGPAT2 LINC01451 SNORA17A NALT1 SNHG7 SNORA17B NOTCH1 LCN10 MIR6722 EGFL7 LOC100128593 MIR4674 MIR126
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	HSPC324 FAM69B AGPAT2 LINC01451 EGFL7 MIR126
dgv13006n54	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	HSPC324 FAM69B AGPAT2 SNHG7 EGFL7 MIR126
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	C8G HSPC324 FAM69B AGPAT2 MAMDC4 LOC101930307 CCDC183 ANAPC2 STPG3 MIR4479 LCN10 RNF208 FUT7 PTGDS FBXW5 DPP7 LCN15 EXD3 FAM166A UAP1L1 SLC34A3 PRR31 PHPT1 C9orf142 SNHG7 ABCA2 SSNA1 EGFL7 EDF1 CLIC3 CYSRT1 TUBB4B RABL6 TMEM210 TOR4A MAN1B1-AS1 TMEM141 LINC01451 MIR4292 MAN1B1 SNORA17A NDOR1 LCN12 NRARP SNORA17B MIR6722 CCDC183-AS1 LCN6 MIR3621 LCN8 C9orf139 TPRN RNF224 TMEM203 LCNL1 ENTPD2 C9orf173-AS1 C9orf172 NELFB NPDC1 LRRC26 SAPCD2 TRAF2 LOC100128593 MIR126 GRIN1

More Information

Additional Information:

For this assay, SNP(s) [rs112486513] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity