Hs03720943_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136681487 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	HSPC324 MIR126 LINC01451 EGFL7 AGPAT2
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	HSPC324 MIR4673 MIR126 NOTCH1 LINC01451 SNHG7 FAM69B MIR4674 NALT1 EGFL7 AGPAT2
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	HSPC324 MIR126 LCN8 SNHG7 LCN15 EGFL7 LOC100128593 SNORA17A SNORA17B LINC01451 LCN6 LCN10 MIR6722 FAM69B AGPAT2
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	LOC101930307 UAP1L1 LCN8 GRIN1 MIR4292 LCN12 ENTPD2 LCN15 C9orf142 EDF1 MAN1B1 LOC100128593 MIR4673 CCDC183-AS1 MIR4479 LCN6 LCN10 RABL6 DNLZ MIR3621 C9orf163 HSPC324 CLIC3 INPP5E NPDC1 SEC16A MIR4674 CCDC183 PTGDS SDCCAG3 LRRC26 NOTCH1 FUT7 FBXW5 NALT1 AGPAT2 PRR31 MIR126 DPP7 SNHG7 C9orf139 EGFL7 TMEM141 SNORA17A MAN1B1-AS1 SNORA17B TMEM210 SAPCD2 CARD9 ABCA2 FAM69B C8G MAMDC4 LCNL1 PHPT1 C9orf172 PMPCA LINC01451 SNAPC4 MIR6722 TRAF2
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR126 LCN8 MIR4292 SNHG7 LCN15 EDF1 EGFL7 TMEM141 LOC100128593 SNORA17A MIR4673 SNORA17B CCDC183-AS1 MIR4479 LCN6 LCN10 CARD9 RABL6 DNLZ FAM69B MAMDC4 C9orf163 HSPC324 PHPT1 INPP5E SEC16A MIR4674 C9orf172 PMPCA CCDC183 SDCCAG3 GPSM1 NOTCH1 LINC01451 SNAPC4 MIR6722 TRAF2 NALT1 AGPAT2
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	HSPC324 MIR126 LCN8 SNHG7 LCN15 MIR4674 EGFL7 LOC100128593 SNORA17A MIR4673 SNORA17B NOTCH1 LINC01451 LCN6 LCN10 MIR6722 FAM69B NALT1 AGPAT2
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	HSPC324 MIR126 LINC01451 FAM69B EGFL7 AGPAT2
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	HSPC324 MIR126 SNHG7 FAM69B EGFL7 AGPAT2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	LOC101930307 C9orf173-AS1 UAP1L1 NELFB LCN8 GRIN1 MIR4292 LCN12 ENTPD2 LCN15 C9orf142 EDF1 MAN1B1 LOC100128593 RNF208 CCDC183-AS1 MIR4479 TPRN LCN6 LCN10 RABL6 MIR3621 NDOR1 HSPC324 CLIC3 SLC34A3 NPDC1 TOR4A CCDC183 RNF224 PTGDS LRRC26 CYSRT1 FUT7 STPG3 FBXW5 AGPAT2 SSNA1 PRR31 MIR126 TUBB4B NRARP DPP7 SNHG7 C9orf139 EGFL7 TMEM141 SNORA17A MAN1B1-AS1 SNORA17B TMEM210 SAPCD2 ABCA2 FAM69B C8G MAMDC4 EXD3 LCNL1 TMEM203 PHPT1 ANAPC2 C9orf172 LINC01451 MIR6722 FAM166A TRAF2

More Information

Additional Information:

For this assay, SNP(s) [rs112486513] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity