Hs03765760_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:848096 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	POLR2L PIDD1 CD151 PNPLA2 SNORA52 RPLP2 LOC171391 CEND1 TSPAN4 CRACR2B PANO1 PDDC1 SLC25A22 CHID1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PIDD1 CD151 HRAS LMNTD2 PTDSS2 LOC101927503 AP2A2 RPLP2 DRD4 EPS8L2 LOC143666 MUC2 CRACR2B PDDC1 IRF7 SCT CHID1 RNH1 TMEM80 MIR210HG LOC101059906 POLR2L PNPLA2 PKP3 TOLLIP SIGIRR SNORA52 PHRF1 LOC171391 CEND1 MUC5AC RASSF7 ANO9 TSPAN4 TALDO1 LRRC56 MUC5B CDHR5 MUC6 MIR6744 PANO1 SLC25A22 B4GALNT4 MIR210 DEAF1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	POLR2L PIDD1 CD151 PNPLA2 SNORA52 AP2A2 RPLP2 LOC171391 CEND1 TSPAN4 CRACR2B PANO1 PDDC1 SLC25A22 CHID1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	PIDD1 CD151 HRAS LMNTD2 PTDSS2 LOC101927503 AP2A2 RPLP2 DRD4 TOLLIP-AS1 EPS8L2 LOC143666 MUC2 CRACR2B PDDC1 IRF7 SCT CHID1 RNH1 TMEM80 MIR210HG LOC101059906 POLR2L PNPLA2 TOLLIP SIGIRR SNORA52 PHRF1 LOC171391 CEND1 MUC5AC RASSF7 ANO9 TSPAN4 TALDO1 LRRC56 MUC5B CDHR5 MUC6 MIR6744 PANO1 SLC25A22 MIR210 DEAF1
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	POLR2L PIDD1 CD151 TSPAN4 PNPLA2 CRACR2B SNORA52 AP2A2 RPLP2 CHID1
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PIDD1 CD151 HRAS LMNTD2 PTDSS2 AP2A2 RPLP2 DRD4 EPS8L2 LOC143666 CRACR2B PDDC1 IRF7 SCT CHID1 RNH1 TMEM80 MIR210HG LOC101059906 POLR2L PNPLA2 PKP3 SIGIRR SNORA52 PHRF1 LOC171391 CEND1 RASSF7 ANO9 TSPAN4 TALDO1 LRRC56 CDHR5 PANO1 SLC25A22 B4GALNT4 MIR210 DEAF1
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	POLR2L PIDD1 CD151 PNPLA2 SNORA52 RPLP2 LOC171391 CEND1 TSPAN4 CRACR2B PANO1 PDDC1 SLC25A22 CHID1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PIDD1 CD151 HRAS LMNTD2 PTDSS2 RPLP2 DRD4 EPS8L2 LOC143666 CRACR2B PDDC1 IRF7 SCT CHID1 RNH1 TMEM80 MIR210HG LOC101059906 POLR2L PNPLA2 SNORA52 PHRF1 LOC171391 CEND1 RASSF7 TSPAN4 TALDO1 LRRC56 CDHR5 PANO1 SLC25A22 MIR210 DEAF1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	POLR2L CD151 TSPAN4 PNPLA2 CRACR2B CHID1
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	POLR2L PIDD1 CD151 PNPLA2 SNORA52 RPLP2 LOC171391 CEND1 TSPAN4 TALDO1 CRACR2B PANO1 PDDC1 SLC25A22 CHID1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding