Hs03765760_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:848096 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CHID1 PIDD1 SLC25A22 PNPLA2 CD151 CRACR2B LOC171391 POLR2L RPLP2 SNORA52 TSPAN4 CEND1 PDDC1 PANO1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MIR210HG SIGIRR DRD4 LMNTD2 MUC6 LRRC56 PNPLA2 B4GALNT4 MIR6744 CRACR2B POLR2L RASSF7 RPLP2 SNORA52 MUC5AC TSPAN4 SCT LOC101927503 LOC143666 MUC2 HRAS EPS8L2 PHRF1 PANO1 CHID1 AP2A2 PIDD1 RNH1 SLC25A22 TALDO1 CDHR5 MUC5B CD151 PTDSS2 ANO9 LOC171391 DEAF1 CEND1 PDDC1 IRF7 TOLLIP LOC101059906 MIR210 TMEM80 PKP3
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CHID1 AP2A2 PIDD1 SLC25A22 PNPLA2 CD151 CRACR2B LOC171391 POLR2L RPLP2 SNORA52 TSPAN4 CEND1 PDDC1 PANO1
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MIR210HG SIGIRR DRD4 LMNTD2 MUC6 LRRC56 PNPLA2 MIR6744 CRACR2B POLR2L RASSF7 RPLP2 SNORA52 MUC5AC TSPAN4 SCT LOC101927503 LOC143666 TOLLIP-AS1 MUC2 HRAS EPS8L2 PHRF1 PANO1 CHID1 AP2A2 PIDD1 RNH1 SLC25A22 TALDO1 CDHR5 MUC5B CD151 PTDSS2 ANO9 LOC171391 DEAF1 CEND1 PDDC1 IRF7 TOLLIP LOC101059906 MIR210 TMEM80
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CHID1 AP2A2 PIDD1 PNPLA2 CD151 CRACR2B POLR2L RPLP2 SNORA52 TSPAN4
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CHID1 PIDD1 SLC25A22 PNPLA2 CD151 CRACR2B LOC171391 POLR2L RPLP2 SNORA52 TSPAN4 CEND1 PDDC1 PANO1
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	MIR210HG SIGIRR DRD4 LMNTD2 LRRC56 PNPLA2 B4GALNT4 CRACR2B POLR2L RASSF7 RPLP2 SNORA52 TSPAN4 SCT LOC143666 HRAS EPS8L2 PHRF1 PANO1 CHID1 AP2A2 PIDD1 RNH1 SLC25A22 TALDO1 CDHR5 CD151 PTDSS2 ANO9 LOC171391 DEAF1 CEND1 PDDC1 IRF7 LOC101059906 MIR210 TMEM80 PKP3
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CHID1 PNPLA2 CD151 CRACR2B POLR2L TSPAN4
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	MIR210HG DRD4 LMNTD2 LRRC56 PNPLA2 CRACR2B POLR2L RASSF7 RPLP2 SNORA52 TSPAN4 SCT LOC143666 HRAS EPS8L2 PHRF1 PANO1 CHID1 PIDD1 RNH1 SLC25A22 TALDO1 CDHR5 CD151 PTDSS2 LOC171391 DEAF1 CEND1 PDDC1 IRF7 LOC101059906 MIR210 TMEM80
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CHID1 PIDD1 SLC25A22 TALDO1 PNPLA2 CD151 CRACR2B LOC171391 POLR2L RPLP2 SNORA52 TSPAN4 CEND1 PDDC1 PANO1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding