Hs03767507_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:853493 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CRACR2B POLR2L CD151 CEND1 RPLP2 SLC25A22 LOC171391 PDDC1 CHID1 SNORA52 TSPAN4 PNPLA2 PIDD1 PANO1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CDHR5 LRRC56 LOC101059906 IRF7 RNH1 CD151 LOC101927503 MIR6744 CEND1 SLC25A22 MUC5AC LMNTD2 SIGIRR LOC171391 MIR210HG CHID1 SNORA52 TSPAN4 ANO9 TALDO1 DRD4 EPS8L2 PANO1 DEAF1 HRAS CRACR2B POLR2L MUC6 RASSF7 TOLLIP RPLP2 MUC5B AP2A2 SCT PDDC1 B4GALNT4 PKP3 MIR210 PNPLA2 TMEM80 PIDD1 LOC143666 MUC2 PHRF1 PTDSS2
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	AP2A2 CHID1 MUC6 TSPAN4
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CRACR2B POLR2L CD151 CEND1 RPLP2 SLC25A22 LOC171391 AP2A2 PDDC1 CHID1 SNORA52 TSPAN4 PNPLA2 PIDD1 PANO1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CDHR5 LRRC56 LOC101059906 IRF7 RNH1 CD151 LOC101927503 MIR6744 CEND1 SLC25A22 MUC5AC LMNTD2 SIGIRR LOC171391 MIR210HG CHID1 SNORA52 TSPAN4 ANO9 TALDO1 DRD4 EPS8L2 PANO1 DEAF1 HRAS CRACR2B POLR2L MUC6 RASSF7 TOLLIP RPLP2 MUC5B TOLLIP-AS1 AP2A2 SCT PDDC1 MIR210 PNPLA2 TMEM80 PIDD1 LOC143666 MUC2 PHRF1 PTDSS2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	AP2A2 CRACR2B CHID1 POLR2L CD151 SNORA52 TSPAN4 PNPLA2 PIDD1 RPLP2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CDHR5 LRRC56 LOC101059906 IRF7 RNH1 CD151 CEND1 SLC25A22 LMNTD2 SIGIRR LOC171391 MIR210HG CHID1 SNORA52 TSPAN4 ANO9 TALDO1 DRD4 EPS8L2 PANO1 DEAF1 HRAS CRACR2B POLR2L RASSF7 RPLP2 AP2A2 SCT PDDC1 B4GALNT4 PKP3 MIR210 PNPLA2 TMEM80 PIDD1 LOC143666 PHRF1 PTDSS2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CRACR2B POLR2L CD151 CEND1 RPLP2 SLC25A22 LOC171391 PDDC1 CHID1 SNORA52 TSPAN4 PNPLA2 PIDD1 PANO1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CDHR5 LRRC56 LOC101059906 IRF7 RNH1 CD151 CEND1 SLC25A22 LMNTD2 LOC171391 MIR210HG CHID1 SNORA52 TSPAN4 TALDO1 DRD4 EPS8L2 PANO1 DEAF1 HRAS CRACR2B POLR2L RASSF7 RPLP2 SCT PDDC1 MIR210 PNPLA2 TMEM80 PIDD1 LOC143666 PHRF1 PTDSS2
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CRACR2B CHID1 POLR2L CD151 TSPAN4 PNPLA2
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CRACR2B POLR2L CD151 CEND1 RPLP2 SLC25A22 LOC171391 PDDC1 CHID1 SNORA52 TSPAN4 PNPLA2 TALDO1 PIDD1 PANO1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding