Hs03767507_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:853493 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	PANO1 CRACR2B TSPAN4 PNPLA2 PDDC1 CEND1 SLC25A22 POLR2L LOC171391 PIDD1 CD151 SNORA52 CHID1 RPLP2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PANO1 TOLLIP LOC101927503 CRACR2B DEAF1 TSPAN4 SCT PTDSS2 RNH1 MIR210 MUC5AC MIR210HG EPS8L2 CEND1 SLC25A22 PIDD1 IRF7 MUC5B TALDO1 TMEM80 HRAS ANO9 SIGIRR PKP3 PNPLA2 PDDC1 DRD4 PHRF1 LOC143666 RASSF7 MUC6 LMNTD2 LOC101059906 POLR2L LOC171391 AP2A2 MIR6744 MUC2 CD151 SNORA52 LRRC56 CHID1 B4GALNT4 CDHR5 RPLP2
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	MUC6 TSPAN4 AP2A2 CHID1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	PANO1 CRACR2B TSPAN4 PNPLA2 PDDC1 CEND1 SLC25A22 POLR2L LOC171391 PIDD1 AP2A2 CD151 SNORA52 CHID1 RPLP2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	PANO1 TOLLIP-AS1 TOLLIP LOC101927503 CRACR2B DEAF1 TSPAN4 SCT PTDSS2 RNH1 MIR210 MUC5AC MIR210HG EPS8L2 CEND1 SLC25A22 PIDD1 IRF7 MUC5B TALDO1 TMEM80 HRAS ANO9 SIGIRR PNPLA2 PDDC1 DRD4 PHRF1 LOC143666 RASSF7 MUC6 LMNTD2 LOC101059906 POLR2L LOC171391 AP2A2 MIR6744 MUC2 CD151 SNORA52 LRRC56 CHID1 CDHR5 RPLP2
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CRACR2B POLR2L TSPAN4 PIDD1 AP2A2 PNPLA2 CD151 SNORA52 CHID1 RPLP2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	PANO1 CRACR2B TSPAN4 PNPLA2 PDDC1 CEND1 SLC25A22 POLR2L LOC171391 PIDD1 CD151 SNORA52 CHID1 RPLP2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PANO1 CRACR2B DEAF1 TSPAN4 SCT PTDSS2 RNH1 MIR210 MIR210HG EPS8L2 CEND1 SLC25A22 PIDD1 IRF7 TALDO1 TMEM80 HRAS ANO9 SIGIRR PKP3 PNPLA2 PDDC1 DRD4 PHRF1 LOC143666 RASSF7 LMNTD2 LOC101059906 POLR2L LOC171391 AP2A2 CD151 SNORA52 LRRC56 CHID1 B4GALNT4 CDHR5 RPLP2
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CRACR2B POLR2L TSPAN4 PNPLA2 CD151 CHID1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PANO1 CRACR2B DEAF1 TSPAN4 SCT PTDSS2 RNH1 MIR210 MIR210HG EPS8L2 CEND1 SLC25A22 PIDD1 IRF7 TALDO1 TMEM80 HRAS PNPLA2 PDDC1 DRD4 PHRF1 LOC143666 RASSF7 LMNTD2 LOC101059906 POLR2L LOC171391 CD151 SNORA52 LRRC56 CHID1 CDHR5 RPLP2
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	PANO1 CRACR2B TSPAN4 PNPLA2 PDDC1 CEND1 SLC25A22 POLR2L LOC171391 PIDD1 CD151 SNORA52 CHID1 TALDO1 RPLP2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding