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See other DEAF1 CNV Assays ›
Gene Symbol
DEAF1
Assay Reference Genome
Location

Chr.11:659529 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03770066_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10522

Gene Name:

 DEAF1, transcription factor

Gene Aliases:

 MRD24, NUDR, SPN, ZMYND5

Location:

 Chr.11:644220-695754 on Build GRCh38

Assay Gene Location:

 Within Intron 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DEAF1 NM_001293634.1 NP_001280563.1
NM_021008.3 NP_066288.2
XM_011519842.2 XP_011518144.1
AB209831.1 BAD93068.1
AF007165.1 AAB62704.1
AF049459.1 AAC79676.1
AF049460.1 AAC79677.1
AF068892.1 AAC25714.1
AF068893.1 AAC25715.1
AF068894.1 AAC25716.1
AF068895.1 AAC25717.1
AF068896.1 AAC25718.1
AF068897.1 AAC25719.1
AK289873.1
AK291383.1
BC053322.1 AAH53322.1
FJ985253.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss SNORA52 CHID1 DEAF1 PIDD1 PHRF1 LOC101927503 MIR210HG PTDSS2 TOLLIP PANO1 IRF7 SLC25A22 TSPAN4 RNH1 LOC143666 MIR210 TMEM80 LOC171391 EPS8L2 ANO9 MUC2 MIR6744 MUC5B CDHR5 RASSF7 SCT HRAS MUC5AC CD151 CEND1 AP2A2 PNPLA2 DRD4 PDDC1 TALDO1 LOC101059906 SIGIRR B4GALNT4 CRACR2B PKP3 POLR2L RPLP2 LRRC56 LMNTD2 MUC6
nsv552861 Chr.11:589246 - 662407 on Build GRCh38 Loss DEAF1 SCT DRD4 PHRF1 IRF7 CDHR5
nsv832043 Chr.11:631027 - 758602 on Build GRCh38 Loss DEAF1 DRD4 TMEM80 TALDO1 EPS8L2
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss SNORA52 CHID1 DEAF1 PIDD1 PHRF1 LOC101927503 MIR210HG PTDSS2 TOLLIP PANO1 IRF7 SLC25A22 TSPAN4 RNH1 LOC143666 MIR210 TMEM80 LOC171391 EPS8L2 ANO9 MUC2 MIR6744 MUC5B CDHR5 RASSF7 SCT HRAS MUC5AC CD151 CEND1 AP2A2 PNPLA2 DRD4 TOLLIP-AS1 PDDC1 TALDO1 LOC101059906 SIGIRR CRACR2B POLR2L RPLP2 LRRC56 LMNTD2 MUC6
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain DEAF1 SCT HRAS PHRF1 MIR210HG IRF7 LOC143666 DRD4 MIR210 LRRC56 LMNTD2 CDHR5 RASSF7
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain DEAF1 SCT HRAS PHRF1 MIR210HG PTDSS2 IRF7 RNH1 LOC143666 DRD4 MIR210 LOC101059906 LRRC56 LMNTD2 CDHR5 RASSF7
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion SNORA52 CHID1 DEAF1 PIDD1 PHRF1 MIR210HG PTDSS2 PANO1 IRF7 SLC25A22 TSPAN4 RNH1 LOC143666 MIR210 TMEM80 LOC171391 EPS8L2 ANO9 CDHR5 RASSF7 SCT HRAS CD151 CEND1 AP2A2 PNPLA2 DRD4 PDDC1 TALDO1 LOC101059906 SIGIRR B4GALNT4 CRACR2B PKP3 POLR2L RPLP2 LRRC56 LMNTD2
dgv1525n54 Chr.11:647869 - 688312 on Build GRCh38 Loss DEAF1
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion SNORA52 CHID1 DEAF1 PIDD1 PHRF1 MIR210HG PTDSS2 PANO1 IRF7 SLC25A22 TSPAN4 RNH1 LOC143666 MIR210 TMEM80 LOC171391 EPS8L2 CDHR5 RASSF7 SCT HRAS CD151 CEND1 PNPLA2 DRD4 PDDC1 TALDO1 LOC101059906 CRACR2B POLR2L RPLP2 LRRC56 LMNTD2

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More Information


Additional Information:

For this assay, SNP(s) [rs72844744] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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