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See other DEAF1 CNV Assays ›
Gene Symbol
DEAF1
Assay Reference Genome
Location

Chr.11:659529 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03770066_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10522

Gene Name:

 DEAF1, transcription factor

Gene Aliases:

 MRD24, NUDR, SPN, ZMYND5

Location:

 Chr.11:644220-695754 on Build GRCh38

Assay Gene Location:

 Within Intron 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DEAF1 NM_001293634.1 NP_001280563.1
NM_021008.3 NP_066288.2
XM_011519842.2 XP_011518144.1
AB209831.1 BAD93068.1
AF007165.1 AAB62704.1
AF049459.1 AAC79676.1
AF049460.1 AAC79677.1
AF068892.1 AAC25714.1
AF068893.1 AAC25715.1
AF068894.1 AAC25716.1
AF068895.1 AAC25717.1
AF068896.1 AAC25718.1
AF068897.1 AAC25719.1
AK289873.1
AK291383.1
BC053322.1 AAH53322.1
FJ985253.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss SCT TOLLIP SLC25A22 MUC5AC LRRC56 LOC143666 SNORA52 RNH1 PKP3 IRF7 RPLP2 MUC5B HRAS LOC171391 CD151 DEAF1 CRACR2B CHID1 PDDC1 ANO9 B4GALNT4 MIR6744 AP2A2 PIDD1 PTDSS2 RASSF7 LMNTD2 PHRF1 TSPAN4 PANO1 MIR210 TMEM80 MUC6 LOC101927503 TALDO1 EPS8L2 SIGIRR MIR210HG CEND1 POLR2L DRD4 MUC2 LOC101059906 CDHR5 PNPLA2
nsv552861 Chr.11:589246 - 662407 on Build GRCh38 Loss IRF7 SCT PHRF1 DEAF1 DRD4 CDHR5
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss SCT TOLLIP SLC25A22 MUC5AC LRRC56 LOC143666 SNORA52 RNH1 IRF7 RPLP2 MUC5B HRAS LOC171391 CD151 DEAF1 CRACR2B CHID1 PDDC1 ANO9 MIR6744 AP2A2 PIDD1 PTDSS2 RASSF7 LMNTD2 PHRF1 TSPAN4 PANO1 TOLLIP-AS1 MIR210 TMEM80 MUC6 LOC101927503 TALDO1 EPS8L2 SIGIRR MIR210HG CEND1 POLR2L DRD4 MUC2 LOC101059906 CDHR5 PNPLA2
nsv832043 Chr.11:631027 - 758602 on Build GRCh38 Loss TALDO1 EPS8L2 DEAF1 DRD4 TMEM80
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain SCT RASSF7 LMNTD2 PHRF1 LRRC56 MIR210 LOC143666 IRF7 HRAS MIR210HG DEAF1 DRD4 CDHR5
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion SCT SLC25A22 LRRC56 LOC143666 SNORA52 RNH1 PKP3 IRF7 RPLP2 HRAS LOC171391 CD151 DEAF1 CRACR2B CHID1 PDDC1 ANO9 B4GALNT4 AP2A2 PIDD1 PTDSS2 RASSF7 LMNTD2 PHRF1 TSPAN4 PANO1 MIR210 TMEM80 TALDO1 EPS8L2 SIGIRR MIR210HG CEND1 POLR2L DRD4 LOC101059906 CDHR5 PNPLA2
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain SCT PTDSS2 RASSF7 LMNTD2 PHRF1 LRRC56 MIR210 LOC143666 RNH1 IRF7 HRAS MIR210HG DEAF1 DRD4 LOC101059906 CDHR5
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion SCT SLC25A22 LRRC56 LOC143666 SNORA52 RNH1 IRF7 RPLP2 HRAS LOC171391 CD151 DEAF1 CRACR2B CHID1 PDDC1 PIDD1 PTDSS2 RASSF7 LMNTD2 PHRF1 TSPAN4 PANO1 MIR210 TMEM80 TALDO1 EPS8L2 MIR210HG CEND1 POLR2L DRD4 LOC101059906 CDHR5 PNPLA2
dgv1525n54 Chr.11:647869 - 688312 on Build GRCh38 Loss DEAF1

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More Information


Additional Information:

For this assay, SNP(s) [rs72844744] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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