Hs03770713_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:849294 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CEND1 CRACR2B PANO1 LOC171391 SNORA52 POLR2L TSPAN4 CD151 RPLP2 SLC25A22 PDDC1 CHID1 PIDD1 PNPLA2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LOC101059906 CEND1 DRD4 PKP3 MUC2 PANO1 LMNTD2 PTDSS2 EPS8L2 LOC171391 B4GALNT4 MIR210HG SCT TSPAN4 CD151 MIR210 PHRF1 PDDC1 AP2A2 CDHR5 MUC5AC PIDD1 MIR6744 TMEM80 DEAF1 TALDO1 HRAS LOC143666 ANO9 RNH1 SIGIRR CRACR2B LOC101927503 IRF7 SNORA52 LRRC56 POLR2L TOLLIP RPLP2 MUC5B SLC25A22 MUC6 CHID1 PNPLA2 RASSF7
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CEND1 CRACR2B PANO1 LOC171391 SNORA52 POLR2L TSPAN4 CD151 RPLP2 SLC25A22 PDDC1 AP2A2 CHID1 PIDD1 PNPLA2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LOC101059906 CEND1 DRD4 TOLLIP-AS1 MUC2 PANO1 LMNTD2 PTDSS2 EPS8L2 LOC171391 MIR210HG SCT TSPAN4 CD151 MIR210 PHRF1 PDDC1 AP2A2 CDHR5 MUC5AC PIDD1 MIR6744 TMEM80 DEAF1 TALDO1 HRAS LOC143666 ANO9 RNH1 SIGIRR CRACR2B LOC101927503 IRF7 SNORA52 LRRC56 POLR2L TOLLIP RPLP2 MUC5B SLC25A22 MUC6 CHID1 PNPLA2 RASSF7
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	SNORA52 POLR2L TSPAN4 CD151 RPLP2 CRACR2B AP2A2 CHID1 PIDD1 PNPLA2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CEND1 CRACR2B PANO1 LOC171391 SNORA52 POLR2L TSPAN4 CD151 RPLP2 SLC25A22 PDDC1 CHID1 PIDD1 PNPLA2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LOC101059906 CEND1 DRD4 PKP3 PANO1 LMNTD2 PTDSS2 EPS8L2 LOC171391 B4GALNT4 MIR210HG SCT TSPAN4 CD151 MIR210 PHRF1 PDDC1 AP2A2 CDHR5 PIDD1 TMEM80 DEAF1 TALDO1 HRAS LOC143666 ANO9 RNH1 SIGIRR CRACR2B IRF7 SNORA52 LRRC56 POLR2L RPLP2 SLC25A22 CHID1 PNPLA2 RASSF7
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	POLR2L TSPAN4 CD151 CRACR2B CHID1 PNPLA2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LOC101059906 CEND1 DRD4 PANO1 LMNTD2 PTDSS2 EPS8L2 LOC171391 MIR210HG SCT TSPAN4 CD151 MIR210 PHRF1 PDDC1 CDHR5 PIDD1 TMEM80 DEAF1 TALDO1 HRAS LOC143666 RNH1 CRACR2B IRF7 SNORA52 LRRC56 POLR2L RPLP2 SLC25A22 CHID1 PNPLA2 RASSF7
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CEND1 TALDO1 CRACR2B PANO1 LOC171391 SNORA52 POLR2L TSPAN4 CD151 RPLP2 SLC25A22 PDDC1 CHID1 PIDD1 PNPLA2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding