Hs03770713_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:849294 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	PNPLA2 TSPAN4 PIDD1 CRACR2B LOC171391 PANO1 POLR2L CEND1 PDDC1 CD151 CHID1 SNORA52 RPLP2 SLC25A22
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	TMEM80 MUC5AC PNPLA2 MUC2 TSPAN4 AP2A2 CRACR2B DRD4 PANO1 LOC101927503 LOC143666 MUC5B LMNTD2 B4GALNT4 PHRF1 CEND1 PTDSS2 CD151 EPS8L2 CDHR5 SLC25A22 DEAF1 LOC101059906 RNH1 TALDO1 PIDD1 IRF7 SCT LRRC56 LOC171391 HRAS MUC6 SIGIRR POLR2L TOLLIP MIR210HG PKP3 ANO9 PDDC1 CHID1 SNORA52 RASSF7 MIR210 RPLP2 MIR6744
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	PNPLA2 TSPAN4 PIDD1 AP2A2 CRACR2B LOC171391 PANO1 POLR2L CEND1 PDDC1 CD151 CHID1 SNORA52 RPLP2 SLC25A22
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	TMEM80 MUC5AC PNPLA2 MUC2 TSPAN4 AP2A2 CRACR2B DRD4 PANO1 LOC101927503 LOC143666 MUC5B LMNTD2 PHRF1 CEND1 PTDSS2 CD151 EPS8L2 CDHR5 SLC25A22 TOLLIP-AS1 DEAF1 LOC101059906 RNH1 TALDO1 PIDD1 IRF7 SCT LRRC56 LOC171391 HRAS MUC6 SIGIRR POLR2L TOLLIP MIR210HG ANO9 PDDC1 CHID1 SNORA52 RASSF7 MIR210 RPLP2 MIR6744
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 CHID1 POLR2L
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PNPLA2 TSPAN4 PIDD1 AP2A2 CD151 CRACR2B CHID1 SNORA52 RPLP2 POLR2L
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	TSPAN4 POLR2L
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	TMEM80 PNPLA2 TSPAN4 AP2A2 CRACR2B DRD4 PANO1 LOC143666 LMNTD2 B4GALNT4 PHRF1 CEND1 PTDSS2 CD151 EPS8L2 CDHR5 SLC25A22 DEAF1 LOC101059906 RNH1 TALDO1 PIDD1 IRF7 SCT LRRC56 LOC171391 HRAS SIGIRR POLR2L MIR210HG PKP3 ANO9 PDDC1 CHID1 SNORA52 RASSF7 MIR210 RPLP2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	PNPLA2 TSPAN4 PIDD1 CRACR2B LOC171391 PANO1 POLR2L CEND1 PDDC1 CD151 CHID1 SNORA52 RPLP2 SLC25A22
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	TMEM80 PNPLA2 TSPAN4 CRACR2B DRD4 PANO1 LOC143666 LMNTD2 PHRF1 CEND1 PTDSS2 CD151 EPS8L2 CDHR5 SLC25A22 DEAF1 LOC101059906 RNH1 TALDO1 PIDD1 IRF7 SCT LRRC56 LOC171391 HRAS POLR2L MIR210HG PDDC1 CHID1 SNORA52 RASSF7 MIR210 RPLP2
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	PNPLA2 TSPAN4 CD151 CRACR2B CHID1 POLR2L
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	PNPLA2 TALDO1 TSPAN4 PIDD1 CRACR2B LOC171391 PANO1 POLR2L CEND1 PDDC1 CD151 CHID1 SNORA52 RPLP2 SLC25A22

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding