Hs03770976_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:617719 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Within Exon 15

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1	15	2317	NP_001165439.1
	NM_021924.4	15	2335	NP_068743.2
	NM_031264.3	14	1753	NP_112554.2
	XM_006718253.3	15	1995	XP_006718316.1
	XM_011520188.2	15	1902	XP_011518490.1
	XM_011520189.2	15	1809	XP_011518491.1
	XM_011520190.2	13	1568	XP_011518492.1
	XM_011520191.2	13	1495	XP_011518493.1
	AF258675.1			AAG16732.1
	AF258676.1	16	2491	AAG16733.1
	AF276242.1	14	1588	AAG30821.1
	AF301909.1	15	2170	AAG33495.1
	AI640262.1
	AK000226.1	15	2353	BAA91021.1
	AK000384.1	14	1658	BAA91130.1
	AK025012.1	8	1323	BAB15052.1
	AK300991.1	15	1605
	AK308040.1	15	2259
	AY358368.1	15	2174	AAQ88734.1
	BC038405.1	14	1610	AAH38405.1
	DQ491193.1	14	1660

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	SCT LMNTD2 PHRF1 MIR210HG LOC101059906 IRF7 LOC143666 MIR210 CDHR5 HRAS RASSF7 LRRC56
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	SCT DEAF1 PHRF1 IRF7 CDHR5 DRD4
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LMNTD2 ANO9 PANO1 PHRF1 IRF7 AP2A2 DRD4 MIR6744 TALDO1 SCT RNH1 TSPAN4 LOC171391 MUC6 PIDD1 RASSF7 PNPLA2 EPS8L2 SLC25A22 DEAF1 CEND1 LOC101927503 TOLLIP-AS1 RPLP2 LOC143666 TMEM80 CDHR5 CHID1 HRAS MUC2 TOLLIP LRRC56 SIGIRR POLR2L MIR210HG LOC101059906 CD151 PDDC1 MUC5AC MIR210 PTDSS2 SNORA52 CRACR2B MUC5B
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	DEAF1 LMNTD2 PHRF1 IRF7 LOC143666 CDHR5 HRAS DRD4 LRRC56 SCT MIR210HG MIR210 RASSF7
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LMNTD2 ANO9 PANO1 PHRF1 IRF7 AP2A2 DRD4 B4GALNT4 TALDO1 SCT RNH1 TSPAN4 LOC171391 PIDD1 RASSF7 PNPLA2 EPS8L2 SLC25A22 DEAF1 CEND1 RPLP2 LOC143666 TMEM80 CDHR5 CHID1 HRAS LRRC56 SIGIRR POLR2L MIR210HG LOC101059906 CD151 PDDC1 MIR210 PTDSS2 SNORA52 CRACR2B PKP3
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	DEAF1 LMNTD2 PHRF1 IRF7 LOC143666 CDHR5 HRAS DRD4 LRRC56 SCT RNH1 MIR210HG LOC101059906 MIR210 PTDSS2 RASSF7
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LMNTD2 PANO1 PHRF1 IRF7 DRD4 TALDO1 SCT RNH1 TSPAN4 LOC171391 PIDD1 RASSF7 PNPLA2 EPS8L2 SLC25A22 DEAF1 CEND1 RPLP2 LOC143666 TMEM80 CDHR5 CHID1 HRAS LRRC56 POLR2L MIR210HG LOC101059906 CD151 PDDC1 MIR210 PTDSS2 SNORA52 CRACR2B
dgv1524n54	Chr.11:610277 - 619789 on Build GRCh38	Loss	PHRF1 IRF7 CDHR5
nsv552856	Chr.11:549119 - 619789 on Build GRCh38	Gain	LMNTD2 PHRF1 MIR210HG IRF7 LOC143666 MIR210 CDHR5 RASSF7 LRRC56
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	LMNTD2 PHRF1 MIR210HG LOC101059906 IRF7 LOC143666 MIR210 CDHR5 HRAS RASSF7 LRRC56
dgv1523n54	Chr.11:557342 - 656940 on Build GRCh38	Gain	SCT DEAF1 LMNTD2 PHRF1 MIR210HG IRF7 LOC143666 MIR210 CDHR5 DRD4 RASSF7
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	SCT IRF7 CDHR5
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	LMNTD2 ANO9 PHRF1 IRF7 LOC143666 CDHR5 HRAS PGGHG IFITM5 IFITM2 B4GALNT4 LRRC56 SIGIRR IFITM1 RNH1 MIR210HG LOC101059906 IFITM3 MIR210 PTDSS2 PKP3 RASSF7
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LMNTD2 ANO9 PANO1 PHRF1 IRF7 AP2A2 DRD4 B4GALNT4 MIR6744 TALDO1 SCT RNH1 TSPAN4 LOC171391 MUC6 PIDD1 RASSF7 PNPLA2 EPS8L2 SLC25A22 DEAF1 CEND1 LOC101927503 RPLP2 LOC143666 TMEM80 CDHR5 CHID1 HRAS MUC2 TOLLIP LRRC56 SIGIRR POLR2L MIR210HG LOC101059906 CD151 PDDC1 MUC5AC MIR210 PTDSS2 SNORA52 CRACR2B PKP3 MUC5B
nsv552862	Chr.11:605856 - 619789 on Build GRCh38	Loss	PHRF1 IRF7 CDHR5
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	SCT DEAF1 PHRF1 IRF7 CDHR5 DRD4
nsv528415	Chr.11:558884 - 620599 on Build GRCh38	Loss	LMNTD2 PHRF1 MIR210HG IRF7 LOC143666 MIR210 CDHR5 RASSF7

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding