Hs03772214_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:852612 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CRACR2B PIDD1 TSPAN4 PDDC1 SNORA52 CHID1 CEND1 PANO1 POLR2L PNPLA2 RPLP2 CD151 LOC171391 SLC25A22
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CRACR2B PHRF1 PDDC1 MUC5AC MIR210HG SNORA52 CHID1 PTDSS2 CDHR5 SCT RNH1 MIR6744 TOLLIP LOC101927503 EPS8L2 RPLP2 CD151 LOC171391 IRF7 SLC25A22 PIDD1 TSPAN4 PKP3 RASSF7 LOC143666 AP2A2 SIGIRR LOC101059906 B4GALNT4 MUC6 MUC5B ANO9 CEND1 TALDO1 DEAF1 PANO1 POLR2L MUC2 MIR210 DRD4 LRRC56 PNPLA2 HRAS TMEM80 LMNTD2
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	TSPAN4 CHID1 AP2A2 MUC6
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CRACR2B PIDD1 TSPAN4 PDDC1 SNORA52 CHID1 AP2A2 CEND1 PANO1 POLR2L PNPLA2 RPLP2 CD151 LOC171391 SLC25A22
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 CHID1 POLR2L
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CRACR2B PHRF1 PDDC1 MUC5AC MIR210HG SNORA52 CHID1 PTDSS2 CDHR5 SCT RNH1 MIR6744 TOLLIP-AS1 TOLLIP LOC101927503 EPS8L2 RPLP2 CD151 LOC171391 IRF7 SLC25A22 PIDD1 TSPAN4 RASSF7 LOC143666 AP2A2 SIGIRR LOC101059906 MUC6 MUC5B ANO9 CEND1 TALDO1 DEAF1 PANO1 POLR2L MUC2 MIR210 DRD4 LRRC56 PNPLA2 HRAS TMEM80 LMNTD2
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CRACR2B PIDD1 TSPAN4 SNORA52 CHID1 POLR2L AP2A2 PNPLA2 RPLP2 CD151
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CRACR2B PIDD1 TSPAN4 PDDC1 SNORA52 CHID1 CEND1 PANO1 POLR2L PNPLA2 RPLP2 CD151 LOC171391 SLC25A22
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CRACR2B PHRF1 PDDC1 MIR210HG SNORA52 CHID1 PTDSS2 CDHR5 SCT RNH1 EPS8L2 RPLP2 CD151 LOC171391 IRF7 SLC25A22 PIDD1 TSPAN4 PKP3 RASSF7 LOC143666 AP2A2 SIGIRR LOC101059906 B4GALNT4 ANO9 CEND1 TALDO1 DEAF1 PANO1 POLR2L MIR210 DRD4 LRRC56 PNPLA2 HRAS TMEM80 LMNTD2
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CRACR2B TSPAN4 CHID1 POLR2L PNPLA2 CD151
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CRACR2B PHRF1 PDDC1 MIR210HG SNORA52 CHID1 PTDSS2 CDHR5 SCT RNH1 EPS8L2 RPLP2 CD151 LOC171391 IRF7 SLC25A22 PIDD1 TSPAN4 RASSF7 LOC143666 LOC101059906 CEND1 TALDO1 DEAF1 PANO1 POLR2L MIR210 DRD4 LRRC56 PNPLA2 HRAS TMEM80 LMNTD2
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CRACR2B PIDD1 TSPAN4 PDDC1 SNORA52 CHID1 CEND1 TALDO1 PANO1 POLR2L PNPLA2 RPLP2 CD151 LOC171391 SLC25A22

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding