Hs03772214_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:852612 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	LOC171391 PDDC1 PNPLA2 TSPAN4 SLC25A22 SNORA52 PIDD1 RPLP2 CEND1 CD151 PANO1 CRACR2B POLR2L CHID1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CDHR5 LOC171391 ANO9 DRD4 LMNTD2 SLC25A22 MUC5AC PIDD1 RPLP2 DEAF1 PTDSS2 PHRF1 MUC6 CD151 PANO1 PKP3 LRRC56 POLR2L SIGIRR LOC101927503 PDDC1 PNPLA2 TSPAN4 MIR210 LOC143666 IRF7 TOLLIP SNORA52 MUC5B MIR210HG LOC101059906 MUC2 B4GALNT4 SCT CEND1 TALDO1 AP2A2 RASSF7 MIR6744 RNH1 HRAS TMEM80 CRACR2B EPS8L2 CHID1
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	MUC6 AP2A2 TSPAN4 CHID1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	LOC171391 PDDC1 PNPLA2 TSPAN4 SLC25A22 SNORA52 PIDD1 RPLP2 CEND1 CD151 AP2A2 PANO1 CRACR2B POLR2L CHID1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CDHR5 LOC171391 ANO9 DRD4 LMNTD2 SLC25A22 MUC5AC PIDD1 RPLP2 DEAF1 PTDSS2 PHRF1 MUC6 CD151 PANO1 LRRC56 POLR2L SIGIRR LOC101927503 PDDC1 PNPLA2 TSPAN4 MIR210 LOC143666 IRF7 TOLLIP SNORA52 MUC5B MIR210HG LOC101059906 MUC2 SCT CEND1 TALDO1 AP2A2 RASSF7 MIR6744 RNH1 HRAS TMEM80 CRACR2B EPS8L2 TOLLIP-AS1 CHID1
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 POLR2L CHID1
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CD151 AP2A2 PNPLA2 TSPAN4 SNORA52 PIDD1 CRACR2B POLR2L RPLP2 CHID1
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CDHR5 LOC171391 ANO9 DRD4 LMNTD2 SLC25A22 PIDD1 RPLP2 DEAF1 PTDSS2 PHRF1 CD151 PANO1 PKP3 LRRC56 POLR2L SIGIRR PDDC1 PNPLA2 TSPAN4 MIR210 LOC143666 IRF7 SNORA52 MIR210HG LOC101059906 B4GALNT4 SCT CEND1 TALDO1 AP2A2 RASSF7 RNH1 HRAS TMEM80 CRACR2B EPS8L2 CHID1
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	LOC171391 PDDC1 PNPLA2 TSPAN4 SLC25A22 SNORA52 PIDD1 RPLP2 CEND1 CD151 PANO1 CRACR2B POLR2L CHID1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CDHR5 LOC171391 DRD4 LMNTD2 SLC25A22 PIDD1 RPLP2 DEAF1 PTDSS2 PHRF1 CD151 PANO1 LRRC56 POLR2L PDDC1 PNPLA2 TSPAN4 MIR210 LOC143666 IRF7 SNORA52 MIR210HG LOC101059906 SCT CEND1 TALDO1 RASSF7 RNH1 HRAS TMEM80 CRACR2B EPS8L2 CHID1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CD151 PNPLA2 TSPAN4 CRACR2B POLR2L CHID1
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	LOC171391 PDDC1 PNPLA2 TSPAN4 SLC25A22 SNORA52 PIDD1 RPLP2 CEND1 CD151 TALDO1 PANO1 CRACR2B POLR2L CHID1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding