Hs03774464_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:851920 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	LOC171391 CRACR2B SNORA52 POLR2L TSPAN4 RPLP2 AP2A2 PIDD1 CHID1 PANO1 SLC25A22 CD151 CEND1 PNPLA2 PDDC1
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MIR210HG SNORA52 LRRC56 POLR2L TSPAN4 RPLP2 IRF7 AP2A2 TOLLIP-AS1 RNH1 SIGIRR MIR210 LOC101059906 TMEM80 MUC2 PANO1 LMNTD2 DEAF1 MUC5B MUC5AC CD151 PNPLA2 TOLLIP CDHR5 LOC101927503 MIR6744 LOC171391 CRACR2B LOC143666 PTDSS2 TALDO1 DRD4 PIDD1 CHID1 SCT ANO9 MUC6 SLC25A22 HRAS CEND1 RASSF7 PHRF1 EPS8L2 PDDC1
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	MIR210HG B4GALNT4 SNORA52 LRRC56 POLR2L TSPAN4 RPLP2 IRF7 AP2A2 RNH1 SIGIRR MIR210 LOC101059906 TMEM80 PANO1 LMNTD2 DEAF1 CD151 PNPLA2 CDHR5 PKP3 LOC171391 CRACR2B LOC143666 PTDSS2 TALDO1 DRD4 PIDD1 CHID1 SCT ANO9 SLC25A22 HRAS CEND1 RASSF7 PHRF1 EPS8L2 PDDC1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	MIR210HG SNORA52 LRRC56 POLR2L TSPAN4 RPLP2 IRF7 RNH1 MIR210 LOC101059906 TMEM80 PANO1 LMNTD2 DEAF1 CD151 PNPLA2 CDHR5 LOC171391 CRACR2B LOC143666 PTDSS2 TALDO1 DRD4 PIDD1 CHID1 SCT SLC25A22 HRAS CEND1 RASSF7 PHRF1 EPS8L2 PDDC1
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	LOC171391 CRACR2B SNORA52 POLR2L TSPAN4 RPLP2 PIDD1 CHID1 PANO1 SLC25A22 CD151 CEND1 PNPLA2 PDDC1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MIR210HG B4GALNT4 SNORA52 LRRC56 POLR2L TSPAN4 RPLP2 IRF7 AP2A2 RNH1 SIGIRR MIR210 LOC101059906 TMEM80 MUC2 PANO1 LMNTD2 DEAF1 MUC5B MUC5AC CD151 PNPLA2 TOLLIP CDHR5 PKP3 LOC101927503 MIR6744 LOC171391 CRACR2B LOC143666 PTDSS2 TALDO1 DRD4 PIDD1 CHID1 SCT ANO9 MUC6 SLC25A22 HRAS CEND1 RASSF7 PHRF1 EPS8L2 PDDC1
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	MUC6 TSPAN4 AP2A2 CHID1
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CRACR2B SNORA52 POLR2L TSPAN4 CD151 RPLP2 PNPLA2 AP2A2 PIDD1 CHID1
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	LOC171391 CRACR2B SNORA52 POLR2L TSPAN4 RPLP2 PIDD1 CHID1 PANO1 SLC25A22 CD151 CEND1 PNPLA2 PDDC1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CRACR2B POLR2L TSPAN4 CD151 PNPLA2 CHID1
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	LOC171391 CRACR2B SNORA52 POLR2L TSPAN4 TALDO1 RPLP2 PIDD1 CHID1 PANO1 SLC25A22 CD151 CEND1 PNPLA2 PDDC1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding