Hs03774464_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:851920 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CRACR2B PANO1 PDDC1 AP2A2 LOC171391 RPLP2 CEND1 PNPLA2 POLR2L PIDD1 SLC25A22 TSPAN4 CHID1 CD151 SNORA52
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MUC5B DRD4 PANO1 MUC2 DEAF1 RPLP2 PNPLA2 POLR2L PIDD1 SLC25A22 LOC101927503 PHRF1 CD151 LRRC56 SCT PTDSS2 HRAS CRACR2B TALDO1 LOC101059906 RNH1 CDHR5 LOC143666 TOLLIP-AS1 MIR210 PDDC1 AP2A2 RASSF7 LOC171391 TOLLIP TMEM80 ANO9 CEND1 SIGIRR MUC5AC TSPAN4 CHID1 LMNTD2 EPS8L2 MIR6744 MIR210HG IRF7 SNORA52 MUC6
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	DRD4 PKP3 PANO1 DEAF1 RPLP2 B4GALNT4 PNPLA2 POLR2L PIDD1 SLC25A22 PHRF1 CD151 LRRC56 SCT PTDSS2 HRAS CRACR2B TALDO1 LOC101059906 RNH1 CDHR5 LOC143666 MIR210 PDDC1 AP2A2 RASSF7 LOC171391 TMEM80 ANO9 CEND1 SIGIRR TSPAN4 CHID1 LMNTD2 EPS8L2 MIR210HG IRF7 SNORA52
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	DRD4 PANO1 DEAF1 RPLP2 PNPLA2 POLR2L PIDD1 SLC25A22 PHRF1 CD151 LRRC56 SCT PTDSS2 HRAS CRACR2B TALDO1 LOC101059906 RNH1 CDHR5 LOC143666 MIR210 PDDC1 RASSF7 LOC171391 TMEM80 CEND1 TSPAN4 CHID1 LMNTD2 EPS8L2 MIR210HG IRF7 SNORA52
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CRACR2B PANO1 PDDC1 LOC171391 RPLP2 CEND1 PNPLA2 POLR2L PIDD1 SLC25A22 TSPAN4 CHID1 CD151 SNORA52
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MUC5B DRD4 PKP3 PANO1 MUC2 DEAF1 RPLP2 B4GALNT4 PNPLA2 POLR2L PIDD1 SLC25A22 LOC101927503 PHRF1 CD151 LRRC56 SCT PTDSS2 HRAS CRACR2B TALDO1 LOC101059906 RNH1 CDHR5 LOC143666 MIR210 PDDC1 AP2A2 RASSF7 LOC171391 TOLLIP TMEM80 ANO9 CEND1 SIGIRR MUC5AC TSPAN4 CHID1 LMNTD2 EPS8L2 MIR6744 MIR210HG IRF7 SNORA52 MUC6
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	TSPAN4 CHID1 AP2A2 MUC6
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	RPLP2 CRACR2B PNPLA2 POLR2L PIDD1 TSPAN4 CHID1 CD151 SNORA52 AP2A2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CRACR2B PANO1 PDDC1 LOC171391 RPLP2 CEND1 PNPLA2 POLR2L PIDD1 SLC25A22 TSPAN4 CHID1 CD151 SNORA52
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CRACR2B PNPLA2 POLR2L TSPAN4 CHID1 CD151
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CRACR2B TALDO1 PANO1 PDDC1 LOC171391 RPLP2 CEND1 PNPLA2 POLR2L PIDD1 SLC25A22 TSPAN4 CHID1 CD151 SNORA52

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding