Hs03776073_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:623473 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1			NP_001165439.1
	NM_021924.4			NP_068743.2
	NM_031264.3			NP_112554.2
	XM_006718253.3			XP_006718316.1
	XM_011520188.2			XP_011518490.1
	XM_011520189.2			XP_011518491.1
	XM_011520190.2			XP_011518492.1
	XM_011520191.2			XP_011518493.1
	AF258675.1			AAG16732.1
	AF258676.1			AAG16733.1
	AF276242.1			AAG30821.1
	AF301909.1			AAG33495.1
	AK000226.1			BAA91021.1
	AK000384.1			BAA91130.1
	AK300991.1
	AK308040.1
	AK309157.1
	AY358368.1			AAQ88734.1
	BC038405.1			AAH38405.1
	DA373160.1
	DQ491193.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	CDHR5 SCT IRF7
dgv1522n54	Chr.11:557342 - 656845 on Build GRCh38	Loss	LOC143666 DEAF1 CDHR5 MIR210 PHRF1 RASSF7 MIR210HG SCT LMNTD2 IRF7 DRD4
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LOC143666 CDHR5 MIR210 LOC101059906 HRAS PHRF1 LRRC56 RASSF7 MIR210HG SCT LMNTD2 IRF7
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PANO1 LOC143666 CDHR5 ANO9 LOC101059906 EPS8L2 CD151 PHRF1 MUC5AC RPLP2 TSPAN4 LOC101927503 MIR210HG SCT MIR6744 LOC171391 DEAF1 PIDD1 AP2A2 CHID1 MUC5B LRRC56 CEND1 PKP3 MUC2 DRD4 B4GALNT4 MUC6 MIR210 HRAS PNPLA2 TOLLIP SNORA52 TALDO1 POLR2L SIGIRR PDDC1 TMEM80 RASSF7 CRACR2B PTDSS2 SLC25A22 LMNTD2 RNH1 IRF7
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	DEAF1 CDHR5 PHRF1 SCT IRF7 DRD4
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	PANO1 LOC143666 CDHR5 ANO9 LOC101059906 TOLLIP-AS1 EPS8L2 CD151 PHRF1 MUC5AC RPLP2 TSPAN4 LOC101927503 MIR210HG SCT MIR6744 LOC171391 DEAF1 PIDD1 AP2A2 CHID1 MUC5B LRRC56 CEND1 MUC2 DRD4 MUC6 MIR210 HRAS PNPLA2 TOLLIP SNORA52 TALDO1 POLR2L SIGIRR PDDC1 TMEM80 RASSF7 CRACR2B PTDSS2 SLC25A22 LMNTD2 RNH1 IRF7
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	DEAF1 CDHR5 PHRF1 SCT IRF7 DRD4
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	LOC143666 CDHR5 MIR210 HRAS PHRF1 MIR210HG SCT DEAF1 LRRC56 RASSF7 LMNTD2 IRF7 DRD4
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LOC143666 CDHR5 MIR210 LOC101059906 HRAS PHRF1 MIR210HG SCT DEAF1 LRRC56 RASSF7 PTDSS2 LMNTD2 RNH1 IRF7 DRD4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PANO1 LOC143666 CDHR5 ANO9 LOC101059906 EPS8L2 CD151 PHRF1 RPLP2 TSPAN4 MIR210HG SCT LOC171391 DEAF1 PIDD1 AP2A2 CHID1 LRRC56 CEND1 PKP3 DRD4 B4GALNT4 MIR210 HRAS PNPLA2 SNORA52 TALDO1 POLR2L SIGIRR PDDC1 TMEM80 RASSF7 CRACR2B PTDSS2 SLC25A22 LMNTD2 RNH1 IRF7
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PANO1 LOC143666 CDHR5 LOC101059906 EPS8L2 CD151 PHRF1 RPLP2 TSPAN4 MIR210HG SCT LOC171391 DEAF1 PIDD1 CHID1 LRRC56 CEND1 DRD4 MIR210 HRAS PNPLA2 SNORA52 TALDO1 POLR2L PDDC1 TMEM80 RASSF7 CRACR2B PTDSS2 SLC25A22 LMNTD2 RNH1 IRF7

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding