Hs03776073_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:623473 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1			NP_001165439.1
	NM_021924.4			NP_068743.2
	NM_031264.3			NP_112554.2
	XM_006718253.3			XP_006718316.1
	XM_011520188.2			XP_011518490.1
	XM_011520189.2			XP_011518491.1
	XM_011520190.2			XP_011518492.1
	XM_011520191.2			XP_011518493.1
	AF258675.1			AAG16732.1
	AF258676.1			AAG16733.1
	AF276242.1			AAG30821.1
	AF301909.1			AAG33495.1
	AK000226.1			BAA91021.1
	AK000384.1			BAA91130.1
	AK300991.1
	AK308040.1
	AK309157.1
	AY358368.1			AAQ88734.1
	BC038405.1			AAH38405.1
	DA373160.1
	DQ491193.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1523n54	Chr.11:557342 - 656940 on Build GRCh38	Gain	CDHR5 PHRF1 LOC143666 DRD4 MIR210 SCT RASSF7 LMNTD2 MIR210HG DEAF1 IRF7
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	CDHR5 SCT IRF7
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	HRAS CDHR5 PHRF1 LRRC56 LOC143666 MIR210 SCT RASSF7 LMNTD2 MIR210HG LOC101059906 IRF7
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PHRF1 SIGIRR PANO1 RNH1 DRD4 SCT MUC6 POLR2L MUC2 MIR6744 MUC5B B4GALNT4 LOC171391 SNORA52 CD151 RASSF7 LMNTD2 LOC101059906 EPS8L2 MUC5AC CHID1 TALDO1 CRACR2B HRAS CDHR5 PTDSS2 LOC143666 LOC101927503 PKP3 TOLLIP ANO9 MIR210HG AP2A2 DEAF1 PDDC1 PIDD1 RPLP2 PNPLA2 LRRC56 TMEM80 SLC25A22 MIR210 IRF7 CEND1 TSPAN4
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	CDHR5 PHRF1 DRD4 SCT DEAF1 IRF7
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	PHRF1 SIGIRR PANO1 RNH1 DRD4 SCT MUC6 POLR2L MUC2 MIR6744 MUC5B LOC171391 SNORA52 CD151 RASSF7 LMNTD2 LOC101059906 EPS8L2 MUC5AC CHID1 TALDO1 CRACR2B HRAS CDHR5 PTDSS2 LOC143666 LOC101927503 TOLLIP ANO9 MIR210HG AP2A2 DEAF1 PDDC1 PIDD1 RPLP2 PNPLA2 LRRC56 TMEM80 SLC25A22 TOLLIP-AS1 MIR210 IRF7 CEND1 TSPAN4
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	CDHR5 PHRF1 DRD4 SCT DEAF1 IRF7
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	HRAS CDHR5 PHRF1 LOC143666 DRD4 SCT MIR210HG DEAF1 LRRC56 MIR210 RASSF7 LMNTD2 IRF7
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PHRF1 SIGIRR PANO1 RNH1 DRD4 SCT POLR2L B4GALNT4 LOC171391 SNORA52 CD151 RASSF7 LMNTD2 LOC101059906 EPS8L2 CHID1 TALDO1 CRACR2B HRAS CDHR5 PTDSS2 LOC143666 PKP3 ANO9 MIR210HG AP2A2 DEAF1 PDDC1 PIDD1 RPLP2 PNPLA2 LRRC56 TMEM80 SLC25A22 MIR210 IRF7 CEND1 TSPAN4
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	HRAS CDHR5 PHRF1 PTDSS2 LOC143666 RNH1 DRD4 SCT MIR210HG DEAF1 LRRC56 MIR210 RASSF7 LMNTD2 LOC101059906 IRF7
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PHRF1 PANO1 RNH1 DRD4 SCT POLR2L LOC171391 SNORA52 CD151 RASSF7 LMNTD2 LOC101059906 EPS8L2 CHID1 TALDO1 CRACR2B HRAS CDHR5 PTDSS2 LOC143666 MIR210HG DEAF1 PDDC1 PIDD1 RPLP2 PNPLA2 LRRC56 TMEM80 SLC25A22 MIR210 IRF7 CEND1 TSPAN4

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding