Hs03776365_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:621820 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1			NP_001165439.1
	NM_021924.4			NP_068743.2
	NM_031264.3			NP_112554.2
	XM_006718253.3			XP_006718316.1
	XM_011520188.2			XP_011518490.1
	XM_011520189.2			XP_011518491.1
	XM_011520190.2			XP_011518492.1
	XM_011520191.2			XP_011518493.1
	AF258675.1			AAG16732.1
	AF258676.1			AAG16733.1
	AF276242.1			AAG30821.1
	AF301909.1			AAG33495.1
	AK000226.1			BAA91021.1
	AK000384.1			BAA91130.1
	AK300991.1
	AK308040.1
	AK309157.1
	AY358368.1			AAQ88734.1
	BC038405.1			AAH38405.1
	DA373160.1
	DQ491193.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	SCT IRF7 CDHR5
dgv1522n54	Chr.11:557342 - 656845 on Build GRCh38	Loss	DRD4 MIR210HG LOC143666 RASSF7 SCT MIR210 DEAF1 IRF7 PHRF1 LMNTD2 CDHR5
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LOC101059906 MIR210HG LOC143666 RASSF7 SCT HRAS MIR210 IRF7 LRRC56 PHRF1 LMNTD2 CDHR5
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	RNH1 LOC101059906 SNORA52 RASSF7 SCT TALDO1 CEND1 EPS8L2 TMEM80 CDHR5 RPLP2 SIGIRR AP2A2 ANO9 TOLLIP MIR210HG LOC143666 MUC2 MUC6 PANO1 CHID1 PDDC1 MIR6744 PTDSS2 PIDD1 MUC5AC DRD4 LOC171391 SLC25A22 POLR2L DEAF1 LOC101927503 IRF7 CD151 PHRF1 PKP3 CRACR2B TSPAN4 B4GALNT4 HRAS MIR210 MUC5B PNPLA2 LRRC56 LMNTD2
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	DRD4 SCT DEAF1 IRF7 PHRF1 CDHR5
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	RNH1 LOC101059906 SNORA52 TOLLIP-AS1 RASSF7 SCT TALDO1 CEND1 EPS8L2 TMEM80 CDHR5 RPLP2 SIGIRR AP2A2 ANO9 TOLLIP MIR210HG LOC143666 MUC2 MUC6 PANO1 CHID1 PDDC1 MIR6744 PTDSS2 PIDD1 MUC5AC DRD4 LOC171391 SLC25A22 POLR2L DEAF1 LOC101927503 IRF7 CD151 PHRF1 CRACR2B TSPAN4 HRAS MIR210 MUC5B PNPLA2 LRRC56 LMNTD2
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	DRD4 SCT DEAF1 IRF7 PHRF1 CDHR5
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	DRD4 RASSF7 SCT DEAF1 IRF7 PHRF1 CDHR5 MIR210HG LOC143666 HRAS MIR210 LRRC56 LMNTD2
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	DRD4 RNH1 LOC101059906 RASSF7 SCT DEAF1 IRF7 PHRF1 CDHR5 MIR210HG LOC143666 HRAS MIR210 LRRC56 PTDSS2 LMNTD2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	RNH1 LOC101059906 SNORA52 RASSF7 SCT TALDO1 CEND1 EPS8L2 TMEM80 CDHR5 RPLP2 SIGIRR AP2A2 ANO9 MIR210HG LOC143666 PANO1 CHID1 PDDC1 PTDSS2 PIDD1 DRD4 LOC171391 SLC25A22 POLR2L DEAF1 IRF7 CD151 PHRF1 PKP3 CRACR2B TSPAN4 B4GALNT4 HRAS MIR210 PNPLA2 LRRC56 LMNTD2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	RNH1 LOC101059906 SNORA52 RASSF7 SCT TALDO1 CEND1 EPS8L2 TMEM80 CDHR5 RPLP2 MIR210HG LOC143666 PANO1 CHID1 PDDC1 PTDSS2 PIDD1 DRD4 LOC171391 SLC25A22 POLR2L DEAF1 IRF7 CD151 PHRF1 CRACR2B TSPAN4 HRAS MIR210 PNPLA2 LRRC56 LMNTD2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding