Hs03776365_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:621820 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1			NP_001165439.1
	NM_021924.4			NP_068743.2
	NM_031264.3			NP_112554.2
	XM_006718253.3			XP_006718316.1
	XM_011520188.2			XP_011518490.1
	XM_011520189.2			XP_011518491.1
	XM_011520190.2			XP_011518492.1
	XM_011520191.2			XP_011518493.1
	AF258675.1			AAG16732.1
	AF258676.1			AAG16733.1
	AF276242.1			AAG30821.1
	AF301909.1			AAG33495.1
	AK000226.1			BAA91021.1
	AK000384.1			BAA91130.1
	AK300991.1
	AK308040.1
	AK309157.1
	AY358368.1			AAQ88734.1
	BC038405.1			AAH38405.1
	DA373160.1
	DQ491193.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1523n54	Chr.11:557342 - 656940 on Build GRCh38	Gain	SCT LMNTD2 LOC143666 MIR210HG DEAF1 DRD4 IRF7 PHRF1 CDHR5 MIR210 RASSF7
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	SCT IRF7 CDHR5
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	SCT LMNTD2 LOC143666 MIR210HG IRF7 PHRF1 CDHR5 MIR210 LOC101059906 HRAS RASSF7 LRRC56
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	SCT PKP3 TSPAN4 DEAF1 TOLLIP DRD4 SNORA52 B4GALNT4 CDHR5 ANO9 PANO1 RASSF7 PTDSS2 LRRC56 LMNTD2 MUC2 RPLP2 LOC143666 PNPLA2 RNH1 TMEM80 MIR210 LOC101059906 MUC6 PDDC1 SLC25A22 HRAS CEND1 CHID1 PIDD1 EPS8L2 LOC171391 MUC5B MIR6744 MUC5AC SIGIRR TALDO1 POLR2L AP2A2 MIR210HG IRF7 CD151 PHRF1 CRACR2B LOC101927503
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	SCT DEAF1 DRD4 IRF7 PHRF1 CDHR5
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	SCT TOLLIP-AS1 TSPAN4 DEAF1 TOLLIP DRD4 SNORA52 CDHR5 ANO9 PANO1 RASSF7 PTDSS2 LRRC56 LMNTD2 MUC2 RPLP2 LOC143666 PNPLA2 RNH1 TMEM80 MIR210 LOC101059906 MUC6 PDDC1 SLC25A22 HRAS CEND1 CHID1 PIDD1 EPS8L2 LOC171391 MUC5B MIR6744 MUC5AC SIGIRR TALDO1 POLR2L AP2A2 MIR210HG IRF7 CD151 PHRF1 CRACR2B LOC101927503
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	SCT DEAF1 DRD4 IRF7 PHRF1 CDHR5
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	SCT DEAF1 DRD4 CDHR5 RASSF7 LRRC56 LMNTD2 LOC143666 MIR210HG IRF7 PHRF1 MIR210 HRAS
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	SCT PKP3 TSPAN4 DEAF1 DRD4 SNORA52 B4GALNT4 CDHR5 ANO9 PANO1 RASSF7 PTDSS2 LRRC56 LMNTD2 RPLP2 LOC143666 PNPLA2 RNH1 TMEM80 MIR210 LOC101059906 PDDC1 SLC25A22 HRAS CEND1 CHID1 PIDD1 EPS8L2 LOC171391 SIGIRR TALDO1 POLR2L AP2A2 MIR210HG IRF7 CD151 PHRF1 CRACR2B
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	SCT DEAF1 DRD4 CDHR5 RASSF7 PTDSS2 LRRC56 LMNTD2 LOC143666 MIR210HG RNH1 IRF7 PHRF1 MIR210 LOC101059906 HRAS
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	SCT TSPAN4 DEAF1 DRD4 SNORA52 CDHR5 PANO1 RASSF7 PTDSS2 LRRC56 LMNTD2 RPLP2 LOC143666 PNPLA2 RNH1 TMEM80 MIR210 LOC101059906 PDDC1 SLC25A22 HRAS CEND1 CHID1 PIDD1 EPS8L2 LOC171391 TALDO1 POLR2L MIR210HG IRF7 CD151 PHRF1 CRACR2B

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding