Hs03778339_cn

• Gene Symbol: LRRC56
• Assay Reference Genome Location: Chr.11:542276 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	NM_198075.3			NP_932341.1
	XM_005252775.2			XP_005252832.1
	XM_005252776.2			XP_005252833.1
	XM_006718132.2			XP_006718195.1
	XM_006718133.2			XP_006718196.1
	XM_011519875.2			XP_011518177.1
	XM_011519876.1			XP_011518178.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1
	AK024495.1			BAB15785.1
	BC016439.1
	BC035937.1			AAH35937.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	IRF7 RASSF7 LMNTD2 HRAS LRRC56 LOC143666 MIR210 PHRF1 MIR210HG LOC101059906 CDHR5
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	IRF7 RASSF7 PGGHG ANO9 LRRC56 RNH1 MIR210 IFITM3 IFITM1 LMNTD2 IFITM2 SIGIRR PTDSS2 IFITM5 PKP3 HRAS LOC143666 PHRF1 MIR210HG LOC101059906 CDHR5 B4GALNT4
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	IRF7 RASSF7 LMNTD2 SCT HRAS LRRC56 LOC143666 MIR210 PHRF1 MIR210HG LOC101059906 CDHR5
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	RASSF7 CRACR2B EPS8L2 TSPAN4 DEAF1 RNH1 MIR210 TOLLIP PIDD1 LMNTD2 PTDSS2 TMEM80 CHID1 SNORA52 MUC5B HRAS RPLP2 MUC5AC TALDO1 MIR210HG AP2A2 CDHR5 B4GALNT4 IRF7 PNPLA2 CD151 LOC101927503 POLR2L ANO9 SLC25A22 LRRC56 DRD4 MUC2 MIR6744 CEND1 SIGIRR SCT PDDC1 MUC6 PANO1 PKP3 LOC143666 PHRF1 LOC171391 LOC101059906
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	RASSF7 CRACR2B EPS8L2 TSPAN4 DEAF1 RNH1 MIR210 TOLLIP PIDD1 LMNTD2 PTDSS2 TMEM80 CHID1 SNORA52 MUC5B HRAS RPLP2 MUC5AC TALDO1 MIR210HG AP2A2 CDHR5 IRF7 PNPLA2 CD151 LOC101927503 POLR2L ANO9 SLC25A22 LRRC56 DRD4 MUC2 MIR6744 CEND1 SIGIRR SCT PDDC1 MUC6 PANO1 TOLLIP-AS1 LOC143666 PHRF1 LOC171391 LOC101059906
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	IRF7 RASSF7 DEAF1 LRRC56 MIR210 DRD4 LMNTD2 SCT HRAS LOC143666 PHRF1 MIR210HG CDHR5
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	RASSF7 CRACR2B EPS8L2 TSPAN4 DEAF1 RNH1 MIR210 PIDD1 LMNTD2 PTDSS2 TMEM80 CHID1 SNORA52 HRAS RPLP2 TALDO1 MIR210HG AP2A2 CDHR5 B4GALNT4 IRF7 PNPLA2 CD151 POLR2L ANO9 SLC25A22 LRRC56 DRD4 CEND1 SIGIRR SCT PDDC1 PANO1 PKP3 LOC143666 PHRF1 LOC171391 LOC101059906
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	IRF7 RASSF7 DEAF1 LRRC56 RNH1 MIR210 DRD4 LMNTD2 PTDSS2 SCT HRAS LOC143666 PHRF1 MIR210HG LOC101059906 CDHR5
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	RASSF7 CRACR2B EPS8L2 TSPAN4 DEAF1 RNH1 MIR210 PIDD1 LMNTD2 PTDSS2 TMEM80 CHID1 SNORA52 HRAS RPLP2 TALDO1 MIR210HG CDHR5 IRF7 PNPLA2 CD151 POLR2L SLC25A22 LRRC56 DRD4 CEND1 SCT PDDC1 PANO1 LOC143666 PHRF1 LOC171391 LOC101059906
nsv552855	Chr.11:532923 - 545087 on Build GRCh38	Loss	HRAS LRRC56

More Information

Additional Information:

For this assay, SNP(s) [rs117957959,rs67182149] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation