Hs03778339_cn

• Gene Symbol: LRRC56
• Assay Reference Genome Location: Chr.11:542276 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	NM_198075.3			NP_932341.1
	XM_005252775.2			XP_005252832.1
	XM_005252776.2			XP_005252833.1
	XM_006718132.2			XP_006718195.1
	XM_006718133.2			XP_006718196.1
	XM_011519875.2			XP_011518177.1
	XM_011519876.1			XP_011518178.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1
	AK024495.1			BAB15785.1
	BC016439.1
	BC035937.1			AAH35937.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv467634	Chr.11:511805 - 619789 on Build GRCh38	Loss	LOC101059906 LRRC56 IRF7 MIR210 LOC143666 LMNTD2 MIR210HG RASSF7 HRAS PHRF1 CDHR5
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	LRRC56 IFITM1 IRF7 ANO9 PTDSS2 MIR210 LOC143666 PGGHG LMNTD2 PKP3 RNH1 RASSF7 CDHR5 LOC101059906 B4GALNT4 IFITM5 MIR210HG IFITM2 HRAS SIGIRR PHRF1 IFITM3
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LOC101059906 LRRC56 IRF7 SCT MIR210 LOC143666 LMNTD2 MIR210HG RASSF7 HRAS PHRF1 CDHR5
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LRRC56 IRF7 PTDSS2 POLR2L MUC2 PANO1 PNPLA2 LMNTD2 MUC6 TMEM80 MIR6744 CDHR5 EPS8L2 CD151 PDDC1 SCT B4GALNT4 TOLLIP PIDD1 TSPAN4 SLC25A22 MIR210HG HRAS SIGIRR PHRF1 ANO9 LOC171391 MIR210 LOC101927503 LOC143666 PKP3 DEAF1 RNH1 SNORA52 RASSF7 CRACR2B TALDO1 LOC101059906 AP2A2 DRD4 CHID1 RPLP2 MUC5B CEND1 MUC5AC
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LRRC56 IRF7 PTDSS2 POLR2L TOLLIP-AS1 MUC2 PANO1 PNPLA2 LMNTD2 MUC6 TMEM80 MIR6744 CDHR5 EPS8L2 CD151 PDDC1 SCT TOLLIP PIDD1 TSPAN4 SLC25A22 MIR210HG HRAS SIGIRR PHRF1 ANO9 LOC171391 MIR210 LOC101927503 LOC143666 DEAF1 RNH1 SNORA52 RASSF7 CRACR2B TALDO1 LOC101059906 AP2A2 DRD4 CHID1 RPLP2 MUC5B CEND1 MUC5AC
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	LRRC56 IRF7 MIR210 LOC143666 LMNTD2 DEAF1 RASSF7 CDHR5 SCT DRD4 MIR210HG HRAS PHRF1
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LRRC56 IRF7 PTDSS2 MIR210 LOC143666 LMNTD2 DEAF1 RNH1 RASSF7 CDHR5 LOC101059906 SCT DRD4 MIR210HG HRAS PHRF1
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LRRC56 IRF7 PTDSS2 POLR2L PANO1 PNPLA2 LMNTD2 TMEM80 CDHR5 EPS8L2 CD151 PDDC1 SCT B4GALNT4 PIDD1 TSPAN4 SLC25A22 MIR210HG HRAS SIGIRR PHRF1 ANO9 LOC171391 MIR210 LOC143666 PKP3 DEAF1 RNH1 SNORA52 RASSF7 CRACR2B TALDO1 LOC101059906 AP2A2 DRD4 CHID1 RPLP2 CEND1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LRRC56 IRF7 PTDSS2 POLR2L PANO1 PNPLA2 LMNTD2 TMEM80 CDHR5 EPS8L2 CD151 PDDC1 SCT PIDD1 TSPAN4 SLC25A22 MIR210HG HRAS PHRF1 LOC171391 MIR210 LOC143666 DEAF1 RNH1 SNORA52 RASSF7 CRACR2B TALDO1 LOC101059906 DRD4 CHID1 RPLP2 CEND1
nsv552855	Chr.11:532923 - 545087 on Build GRCh38	Loss	LRRC56 HRAS

More Information

Additional Information:

For this assay, SNP(s) [rs117957959,rs67182149] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation