Hs03780654_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:845053 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	AP2A2 CHID1 POLR2L PANO1 PIDD1 LOC171391 TSPAN4 SNORA52 CEND1 RPLP2 CRACR2B PDDC1 PNPLA2 CD151 SLC25A22
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	AP2A2 MIR6744 EPS8L2 MUC5B PANO1 IRF7 PIDD1 MUC5AC SCT CDHR5 PTDSS2 MIR210 LOC171391 TALDO1 RASSF7 SNORA52 MUC6 LOC101059906 DEAF1 CRACR2B LMNTD2 CD151 SIGIRR MUC2 SLC25A22 RNH1 CHID1 DRD4 POLR2L PHRF1 TMEM80 LOC143666 HRAS TOLLIP LOC101927503 TSPAN4 CEND1 MIR210HG RPLP2 PDDC1 PNPLA2 TOLLIP-AS1 ANO9 LRRC56
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	AP2A2 EPS8L2 PANO1 IRF7 PIDD1 SCT CDHR5 PTDSS2 MIR210 LOC171391 TALDO1 RASSF7 SNORA52 LOC101059906 DEAF1 CRACR2B LMNTD2 CD151 PKP3 SIGIRR SLC25A22 RNH1 CHID1 DRD4 POLR2L PHRF1 TMEM80 LOC143666 B4GALNT4 HRAS TSPAN4 CEND1 MIR210HG RPLP2 PDDC1 PNPLA2 ANO9 LRRC56
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	EPS8L2 PANO1 IRF7 PIDD1 SCT CDHR5 PTDSS2 MIR210 LOC171391 TALDO1 RASSF7 SNORA52 LOC101059906 DEAF1 CRACR2B LMNTD2 CD151 SLC25A22 RNH1 CHID1 DRD4 POLR2L PHRF1 TMEM80 LOC143666 HRAS TSPAN4 CEND1 MIR210HG RPLP2 PDDC1 PNPLA2 LRRC56
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CHID1 POLR2L PANO1 PIDD1 LOC171391 TSPAN4 SNORA52 CEND1 RPLP2 CRACR2B PDDC1 PNPLA2 CD151 SLC25A22
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	AP2A2 MIR6744 EPS8L2 MUC5B PANO1 IRF7 PIDD1 MUC5AC SCT CDHR5 PTDSS2 MIR210 LOC171391 TALDO1 RASSF7 SNORA52 MUC6 LOC101059906 DEAF1 CRACR2B LMNTD2 CD151 PKP3 SIGIRR MUC2 SLC25A22 RNH1 CHID1 DRD4 POLR2L PHRF1 TMEM80 LOC143666 B4GALNT4 HRAS TOLLIP LOC101927503 TSPAN4 CEND1 MIR210HG RPLP2 PDDC1 PNPLA2 ANO9 LRRC56
nsv552888	Chr.11:841959 - 846738 on Build GRCh38	Loss	POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	AP2A2 CHID1 POLR2L RPLP2 CRACR2B PIDD1 PNPLA2 CD151 TSPAN4 SNORA52
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CHID1 POLR2L PANO1 PIDD1 LOC171391 TSPAN4 SNORA52 CEND1 RPLP2 CRACR2B PDDC1 PNPLA2 CD151 SLC25A22
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CHID1 POLR2L CRACR2B PNPLA2 CD151 TSPAN4
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CHID1 POLR2L PANO1 PIDD1 LOC171391 TALDO1 TSPAN4 SNORA52 CEND1 RPLP2 CRACR2B PDDC1 PNPLA2 CD151 SLC25A22

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding