Hs03780654_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:845053 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CHID1 TSPAN4 RPLP2 POLR2L CEND1 SNORA52 AP2A2 CD151 PNPLA2 CRACR2B PIDD1 SLC25A22 PANO1 LOC171391 PDDC1
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 TSPAN4 POLR2L
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	SIGIRR RNH1 LOC143666 CHID1 TSPAN4 RPLP2 EPS8L2 CEND1 MIR210 IRF7 MIR6744 PHRF1 MUC5AC MUC2 TOLLIP-AS1 RASSF7 LMNTD2 ANO9 MUC6 CDHR5 DEAF1 LOC101059906 LRRC56 TMEM80 TOLLIP DRD4 PTDSS2 SCT POLR2L HRAS SNORA52 AP2A2 CD151 PNPLA2 TALDO1 CRACR2B MIR210HG PIDD1 SLC25A22 MUC5B PANO1 LOC171391 PDDC1 LOC101927503
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	TSPAN4 POLR2L
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	SIGIRR RNH1 LOC143666 CHID1 TSPAN4 RPLP2 EPS8L2 CEND1 MIR210 IRF7 PHRF1 PKP3 RASSF7 LMNTD2 ANO9 CDHR5 DEAF1 LOC101059906 LRRC56 TMEM80 DRD4 PTDSS2 SCT POLR2L HRAS SNORA52 AP2A2 CD151 PNPLA2 B4GALNT4 TALDO1 CRACR2B MIR210HG PIDD1 SLC25A22 PANO1 LOC171391 PDDC1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	RNH1 LOC143666 CHID1 TSPAN4 RPLP2 EPS8L2 CEND1 MIR210 IRF7 PHRF1 RASSF7 LMNTD2 CDHR5 DEAF1 LOC101059906 LRRC56 TMEM80 DRD4 PTDSS2 SCT POLR2L HRAS SNORA52 CD151 PNPLA2 TALDO1 CRACR2B MIR210HG PIDD1 SLC25A22 PANO1 LOC171391 PDDC1
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CHID1 TSPAN4 RPLP2 POLR2L CEND1 SNORA52 CD151 PNPLA2 CRACR2B PIDD1 SLC25A22 PANO1 LOC171391 PDDC1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	SIGIRR RNH1 LOC143666 CHID1 TSPAN4 RPLP2 EPS8L2 CEND1 MIR210 IRF7 MIR6744 PHRF1 MUC5AC PKP3 MUC2 RASSF7 LMNTD2 ANO9 MUC6 CDHR5 DEAF1 LOC101059906 LRRC56 TMEM80 TOLLIP DRD4 PTDSS2 SCT POLR2L HRAS SNORA52 AP2A2 CD151 PNPLA2 B4GALNT4 TALDO1 CRACR2B MIR210HG PIDD1 SLC25A22 MUC5B PANO1 LOC171391 PDDC1 LOC101927503
nsv552888	Chr.11:841959 - 846738 on Build GRCh38	Loss	TSPAN4 POLR2L
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PNPLA2 CRACR2B CHID1 PIDD1 TSPAN4 RPLP2 POLR2L SNORA52 AP2A2 CD151
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CHID1 TSPAN4 RPLP2 POLR2L CEND1 SNORA52 CD151 PNPLA2 CRACR2B PIDD1 SLC25A22 PANO1 LOC171391 PDDC1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	PNPLA2 CRACR2B CHID1 TSPAN4 POLR2L CD151
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CHID1 TSPAN4 RPLP2 POLR2L CEND1 SNORA52 CD151 PNPLA2 TALDO1 CRACR2B PIDD1 SLC25A22 PANO1 LOC171391 PDDC1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding