Hs03781044_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:845845 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	PIDD1 TSPAN4 SLC25A22 RPLP2 LOC171391 CD151 AP2A2 PDDC1 SNORA52 PNPLA2 CEND1 PANO1 CRACR2B POLR2L CHID1
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 POLR2L CHID1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MUC6 TSPAN4 MUC2 MIR210HG CDHR5 DRD4 RNH1 LOC171391 CD151 LRRC56 TOLLIP-AS1 IRF7 LOC101059906 LMNTD2 SNORA52 HRAS CEND1 PANO1 SIGIRR ANO9 CRACR2B POLR2L LOC101927503 PIDD1 SLC25A22 PHRF1 MIR210 RPLP2 PTDSS2 MIR6744 LOC143666 TOLLIP MUC5AC AP2A2 PDDC1 PNPLA2 RASSF7 TALDO1 MUC5B EPS8L2 SCT DEAF1 TMEM80 CHID1
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	TSPAN4 POLR2L
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	TSPAN4 MIR210HG CDHR5 DRD4 RNH1 LOC171391 CD151 LRRC56 IRF7 LOC101059906 LMNTD2 SNORA52 HRAS CEND1 PANO1 SIGIRR ANO9 CRACR2B POLR2L PIDD1 SLC25A22 PHRF1 MIR210 PKP3 RPLP2 PTDSS2 LOC143666 B4GALNT4 AP2A2 PDDC1 PNPLA2 RASSF7 TALDO1 EPS8L2 SCT DEAF1 TMEM80 CHID1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	TSPAN4 MIR210HG CDHR5 DRD4 RNH1 LOC171391 CD151 LRRC56 IRF7 LOC101059906 LMNTD2 SNORA52 HRAS CEND1 PANO1 CRACR2B POLR2L PIDD1 SLC25A22 PHRF1 MIR210 RPLP2 PTDSS2 LOC143666 PDDC1 PNPLA2 RASSF7 TALDO1 EPS8L2 SCT DEAF1 TMEM80 CHID1
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	PIDD1 TSPAN4 SLC25A22 RPLP2 LOC171391 CD151 PDDC1 SNORA52 PNPLA2 CEND1 PANO1 CRACR2B POLR2L CHID1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MUC6 TSPAN4 MUC2 MIR210HG CDHR5 DRD4 RNH1 LOC171391 CD151 LRRC56 IRF7 LOC101059906 LMNTD2 SNORA52 HRAS CEND1 PANO1 SIGIRR ANO9 CRACR2B POLR2L LOC101927503 PIDD1 SLC25A22 PHRF1 MIR210 PKP3 RPLP2 PTDSS2 MIR6744 LOC143666 B4GALNT4 TOLLIP MUC5AC AP2A2 PDDC1 PNPLA2 RASSF7 TALDO1 MUC5B EPS8L2 SCT DEAF1 TMEM80 CHID1
nsv552888	Chr.11:841959 - 846738 on Build GRCh38	Loss	TSPAN4 POLR2L
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PIDD1 TSPAN4 AP2A2 SNORA52 PNPLA2 RPLP2 CRACR2B POLR2L CHID1 CD151
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	PIDD1 TSPAN4 SLC25A22 RPLP2 LOC171391 CD151 PDDC1 SNORA52 PNPLA2 CEND1 PANO1 CRACR2B POLR2L CHID1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	TSPAN4 PNPLA2 CRACR2B POLR2L CHID1 CD151
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	PIDD1 TSPAN4 SLC25A22 RPLP2 LOC171391 CD151 PDDC1 SNORA52 PNPLA2 TALDO1 CEND1 PANO1 CRACR2B POLR2L CHID1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding