Hs03781044_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:845845 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	SLC25A22 POLR2L AP2A2 CRACR2B LOC171391 PNPLA2 CD151 PDDC1 PANO1 CHID1 RPLP2 SNORA52 PIDD1 TSPAN4 CEND1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MUC5AC POLR2L TMEM80 MIR6744 AP2A2 PHRF1 MIR210HG MUC6 SCT CRACR2B DRD4 LOC171391 CD151 DEAF1 RNH1 PDDC1 LOC143666 LOC101059906 CHID1 HRAS MUC5B RPLP2 SIGIRR TSPAN4 CEND1 CDHR5 TOLLIP-AS1 SLC25A22 EPS8L2 LRRC56 TOLLIP PNPLA2 TALDO1 ANO9 MIR210 PTDSS2 RASSF7 LMNTD2 PANO1 IRF7 SNORA52 PIDD1 LOC101927503 MUC2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L CHID1 TSPAN4
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	POLR2L TMEM80 AP2A2 PHRF1 MIR210HG SCT CRACR2B DRD4 LOC171391 CD151 DEAF1 RNH1 PDDC1 LOC143666 LOC101059906 CHID1 HRAS B4GALNT4 RPLP2 SIGIRR TSPAN4 CEND1 CDHR5 SLC25A22 EPS8L2 PKP3 LRRC56 PNPLA2 TALDO1 ANO9 MIR210 PTDSS2 RASSF7 LMNTD2 PANO1 IRF7 SNORA52 PIDD1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	POLR2L TMEM80 PHRF1 MIR210HG SCT CRACR2B DRD4 LOC171391 CD151 DEAF1 RNH1 PDDC1 LOC143666 LOC101059906 CHID1 HRAS RPLP2 TSPAN4 CEND1 CDHR5 SLC25A22 EPS8L2 LRRC56 PNPLA2 TALDO1 MIR210 PTDSS2 RASSF7 LMNTD2 PANO1 IRF7 SNORA52 PIDD1
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	SLC25A22 POLR2L CRACR2B LOC171391 PNPLA2 CD151 PDDC1 PANO1 CHID1 RPLP2 SNORA52 PIDD1 TSPAN4 CEND1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MUC5AC POLR2L TMEM80 MIR6744 AP2A2 PHRF1 MIR210HG MUC6 SCT CRACR2B DRD4 LOC171391 CD151 DEAF1 RNH1 PDDC1 LOC143666 LOC101059906 CHID1 HRAS B4GALNT4 MUC5B RPLP2 SIGIRR TSPAN4 CEND1 CDHR5 SLC25A22 EPS8L2 PKP3 LRRC56 TOLLIP PNPLA2 TALDO1 ANO9 MIR210 PTDSS2 RASSF7 LMNTD2 PANO1 IRF7 SNORA52 PIDD1 LOC101927503 MUC2
nsv552888	Chr.11:841959 - 846738 on Build GRCh38	Loss	POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CD151 POLR2L CHID1 RPLP2 SNORA52 AP2A2 CRACR2B PIDD1 TSPAN4 PNPLA2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	SLC25A22 POLR2L CRACR2B LOC171391 PNPLA2 CD151 PDDC1 PANO1 CHID1 RPLP2 SNORA52 PIDD1 TSPAN4 CEND1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CD151 POLR2L CHID1 CRACR2B TSPAN4 PNPLA2
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	SLC25A22 POLR2L CRACR2B LOC171391 PNPLA2 TALDO1 CD151 PDDC1 PANO1 CHID1 RPLP2 SNORA52 PIDD1 TSPAN4 CEND1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding