Hs03782041_cn

• Gene Symbol: LOC101059906
• Assay Reference Genome Location: Chr.11:530076 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 101059906
• Gene Name: collagen alpha-2(IV) chain-like
• Gene Aliases: -
• Location: Chr.11:528484-532263 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101059906	XM_003959933.4			XP_003959982.2

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	XM_011519875.2			XP_011518177.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	LOC101059906 LRRC56 IRF7 RASSF7 PHRF1 HRAS CDHR5 MIR210 LMNTD2 LOC143666 MIR210HG
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	LOC101059906 IFITM5 SIGIRR IRF7 RASSF7 PHRF1 HRAS IFITM1 CDHR5 ANO9 PGGHG PTDSS2 IFITM3 IFITM2 LRRC56 B4GALNT4 RNH1 PKP3 MIR210 LMNTD2 LOC143666 MIR210HG
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LOC101059906 LRRC56 IRF7 RASSF7 PHRF1 SCT HRAS CDHR5 MIR210 LMNTD2 LOC143666 MIR210HG
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CRACR2B SIGIRR MIR6744 CHID1 RASSF7 PHRF1 SLC25A22 HRAS CDHR5 ANO9 PNPLA2 POLR2L EPS8L2 SNORA52 TMEM80 TALDO1 B4GALNT4 PANO1 PDDC1 RNH1 AP2A2 MIR210 LMNTD2 LOC143666 LOC101059906 TOLLIP IRF7 CD151 DEAF1 RPLP2 CEND1 PIDD1 PTDSS2 LOC171391 LOC101927503 LRRC56 MUC2 MUC5B SCT TSPAN4 DRD4 MUC5AC MUC6 PKP3 MIR210HG
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CRACR2B SIGIRR MIR6744 CHID1 RASSF7 PHRF1 SLC25A22 HRAS CDHR5 ANO9 PNPLA2 POLR2L EPS8L2 SNORA52 TMEM80 TALDO1 PANO1 PDDC1 RNH1 AP2A2 MIR210 LMNTD2 LOC143666 LOC101059906 TOLLIP IRF7 CD151 DEAF1 RPLP2 CEND1 PIDD1 PTDSS2 LOC171391 LOC101927503 LRRC56 MUC2 TOLLIP-AS1 MUC5B SCT TSPAN4 DRD4 MUC5AC MUC6 MIR210HG
esv3366265	Chr.11:528252 - 531250 on Build GRCh38	Duplication	LOC101059906 LRRC56
esv33673	Chr.11:528525 - 530251 on Build GRCh38	Gain	LOC101059906 LRRC56
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CRACR2B SIGIRR CHID1 RASSF7 PHRF1 SLC25A22 HRAS CDHR5 ANO9 PNPLA2 POLR2L EPS8L2 SNORA52 TMEM80 TALDO1 B4GALNT4 PANO1 PDDC1 RNH1 AP2A2 MIR210 LMNTD2 LOC143666 LOC101059906 IRF7 CD151 DEAF1 RPLP2 CEND1 PIDD1 PTDSS2 LOC171391 LRRC56 SCT TSPAN4 DRD4 PKP3 MIR210HG
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LOC101059906 IRF7 RASSF7 PHRF1 DEAF1 HRAS CDHR5 PTDSS2 LRRC56 SCT RNH1 DRD4 MIR210 LMNTD2 LOC143666 MIR210HG
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CRACR2B CHID1 RASSF7 PHRF1 SLC25A22 HRAS CDHR5 PNPLA2 POLR2L EPS8L2 SNORA52 TMEM80 TALDO1 PANO1 PDDC1 RNH1 MIR210 LMNTD2 LOC143666 LOC101059906 IRF7 CD151 DEAF1 RPLP2 CEND1 PIDD1 PTDSS2 LOC171391 LRRC56 SCT TSPAN4 DRD4 MIR210HG

More Information

Additional Information:

For this assay, SNP(s) [rs115456410] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix structural protein