Hs03783085_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:857039 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	SLC25A22 CRACR2B AP2A2 PDDC1 PIDD1 CHID1 TSPAN4 CD151 CEND1 PNPLA2 RPLP2 POLR2L LOC171391 SNORA52 PANO1
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L CHID1 TSPAN4
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LRRC56 EPS8L2 TALDO1 CRACR2B CDHR5 TOLLIP IRF7 MIR210HG TOLLIP-AS1 RASSF7 TSPAN4 CD151 ANO9 HRAS POLR2L LOC171391 MUC5AC LOC143666 SLC25A22 RNH1 AP2A2 MIR210 PDDC1 PIDD1 MUC6 SIGIRR TMEM80 CHID1 DEAF1 PTDSS2 CEND1 SCT MUC2 PNPLA2 RPLP2 MUC5B LMNTD2 DRD4 SNORA52 LOC101059906 PHRF1 MIR6744 LOC101927503 PANO1
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LRRC56 EPS8L2 TALDO1 CRACR2B CDHR5 B4GALNT4 IRF7 MIR210HG RASSF7 TSPAN4 CD151 ANO9 HRAS POLR2L LOC171391 PKP3 LOC143666 SLC25A22 RNH1 AP2A2 MIR210 PDDC1 PIDD1 SIGIRR TMEM80 CHID1 DEAF1 PTDSS2 CEND1 SCT PNPLA2 RPLP2 LMNTD2 DRD4 SNORA52 LOC101059906 PHRF1 PANO1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LRRC56 EPS8L2 TALDO1 CRACR2B CDHR5 IRF7 MIR210HG RASSF7 TSPAN4 CD151 HRAS POLR2L LOC171391 LOC143666 SLC25A22 RNH1 MIR210 PDDC1 PIDD1 TMEM80 CHID1 DEAF1 PTDSS2 CEND1 SCT PNPLA2 RPLP2 LMNTD2 DRD4 SNORA52 LOC101059906 PHRF1 PANO1
esv3625084	Chr.11:856965 - 861642 on Build GRCh38	Loss	TSPAN4
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	SLC25A22 CRACR2B PDDC1 PIDD1 CHID1 TSPAN4 CD151 CEND1 PNPLA2 RPLP2 POLR2L LOC171391 SNORA52 PANO1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LRRC56 EPS8L2 TALDO1 CRACR2B CDHR5 TOLLIP B4GALNT4 IRF7 MIR210HG RASSF7 TSPAN4 CD151 ANO9 HRAS POLR2L LOC171391 PKP3 MUC5AC LOC143666 SLC25A22 RNH1 AP2A2 MIR210 PDDC1 PIDD1 MUC6 SIGIRR TMEM80 CHID1 DEAF1 PTDSS2 CEND1 SCT MUC2 PNPLA2 RPLP2 MUC5B LMNTD2 DRD4 SNORA52 LOC101059906 PHRF1 MIR6744 LOC101927503 PANO1
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	AP2A2 MUC6 CHID1 TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PNPLA2 RPLP2 POLR2L CRACR2B AP2A2 SNORA52 PIDD1 CHID1 TSPAN4 CD151
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	SLC25A22 CRACR2B PDDC1 PIDD1 CHID1 TSPAN4 CD151 CEND1 PNPLA2 RPLP2 POLR2L LOC171391 SNORA52 PANO1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	PNPLA2 POLR2L CRACR2B CHID1 TSPAN4 CD151
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	SLC25A22 TALDO1 CRACR2B PDDC1 PIDD1 CHID1 TSPAN4 CD151 CEND1 PNPLA2 RPLP2 POLR2L LOC171391 SNORA52 PANO1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding