Hs03783085_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:857039 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CRACR2B SLC25A22 RPLP2 CEND1 PDDC1 SNORA52 AP2A2 CHID1 LOC171391 PIDD1 POLR2L TSPAN4 PNPLA2 PANO1 CD151
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	TOLLIP IRF7 RASSF7 TOLLIP-AS1 CRACR2B MIR6744 RNH1 HRAS TMEM80 RPLP2 CDHR5 LRRC56 MIR210HG TALDO1 SNORA52 MUC2 MIR210 SCT ANO9 LOC171391 PTDSS2 LOC143666 DRD4 POLR2L PNPLA2 CD151 DEAF1 MUC6 LMNTD2 SLC25A22 LOC101927503 EPS8L2 MUC5B LOC101059906 MUC5AC CEND1 PHRF1 PDDC1 SIGIRR AP2A2 CHID1 PIDD1 TSPAN4 PANO1
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	IRF7 RASSF7 CRACR2B RNH1 HRAS TMEM80 PKP3 RPLP2 CDHR5 LRRC56 MIR210HG TALDO1 SNORA52 MIR210 SCT ANO9 LOC171391 PTDSS2 LOC143666 DRD4 POLR2L PNPLA2 CD151 DEAF1 LMNTD2 SLC25A22 EPS8L2 LOC101059906 CEND1 B4GALNT4 PHRF1 PDDC1 SIGIRR AP2A2 CHID1 PIDD1 TSPAN4 PANO1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	IRF7 RASSF7 CRACR2B RNH1 HRAS TMEM80 RPLP2 CDHR5 LRRC56 MIR210HG TALDO1 SNORA52 MIR210 SCT LOC171391 PTDSS2 LOC143666 DRD4 POLR2L PNPLA2 CD151 DEAF1 LMNTD2 SLC25A22 EPS8L2 LOC101059906 CEND1 PHRF1 PDDC1 CHID1 PIDD1 TSPAN4 PANO1
esv3625084	Chr.11:856965 - 861642 on Build GRCh38	Loss	TSPAN4
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CRACR2B SLC25A22 RPLP2 CEND1 PDDC1 SNORA52 CHID1 LOC171391 PIDD1 POLR2L TSPAN4 PNPLA2 PANO1 CD151
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	TOLLIP IRF7 RASSF7 CRACR2B MIR6744 RNH1 HRAS TMEM80 PKP3 RPLP2 CDHR5 LRRC56 MIR210HG TALDO1 SNORA52 MUC2 MIR210 SCT ANO9 LOC171391 PTDSS2 LOC143666 DRD4 POLR2L PNPLA2 CD151 DEAF1 MUC6 LMNTD2 SLC25A22 LOC101927503 EPS8L2 MUC5B LOC101059906 MUC5AC CEND1 B4GALNT4 PHRF1 PDDC1 SIGIRR AP2A2 CHID1 PIDD1 TSPAN4 PANO1
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	AP2A2 MUC6 CHID1 TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	AP2A2 CHID1 CRACR2B RPLP2 PIDD1 POLR2L TSPAN4 PNPLA2 SNORA52 CD151
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CRACR2B SLC25A22 RPLP2 CEND1 PDDC1 SNORA52 CHID1 LOC171391 PIDD1 POLR2L TSPAN4 PNPLA2 PANO1 CD151
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CHID1 CRACR2B POLR2L TSPAN4 PNPLA2 CD151
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CRACR2B SLC25A22 RPLP2 CEND1 TALDO1 PDDC1 SNORA52 CHID1 LOC171391 PIDD1 POLR2L TSPAN4 PNPLA2 PANO1 CD151

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding