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See other DEAF1 CNV Assays ›
Gene Symbol
DEAF1
Assay Reference Genome
Location

Chr.11:660271 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03784417_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10522

Gene Name:

 DEAF1, transcription factor

Gene Aliases:

 MRD24, NUDR, SPN, ZMYND5

Location:

 Chr.11:644220-695754 on Build GRCh38

Assay Gene Location:

 Within Intron 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DEAF1 NM_001293634.1 NP_001280563.1
NM_021008.3 NP_066288.2
XM_011519842.2 XP_011518144.1
AB209831.1 BAD93068.1
AF007165.1 AAB62704.1
AF049459.1 AAC79676.1
AF049460.1 AAC79677.1
AF068892.1 AAC25714.1
AF068893.1 AAC25715.1
AF068894.1 AAC25716.1
AF068895.1 AAC25717.1
AF068896.1 AAC25718.1
AF068897.1 AAC25719.1
AK289873.1
AK291383.1
BC053322.1 AAH53322.1
FJ985253.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss RASSF7 TMEM80 MIR210HG SIGIRR TOLLIP MIR6744 CDHR5 IRF7 DEAF1 CD151 LMNTD2 PIDD1 EPS8L2 PDDC1 PANO1 HRAS ANO9 LOC171391 MUC5B PTDSS2 LOC101059906 MUC5AC TSPAN4 LRRC56 SNORA52 PNPLA2 DRD4 CRACR2B MIR210 RNH1 B4GALNT4 AP2A2 LOC101927503 PHRF1 MUC2 CEND1 LOC143666 MUC6 CHID1 SCT TALDO1 POLR2L RPLP2 SLC25A22 PKP3
nsv552861 Chr.11:589246 - 662407 on Build GRCh38 Loss PHRF1 DRD4 SCT CDHR5 IRF7 DEAF1
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss RASSF7 TMEM80 MIR210HG SIGIRR TOLLIP MIR6744 CDHR5 TOLLIP-AS1 IRF7 DEAF1 CD151 LMNTD2 PIDD1 EPS8L2 PDDC1 PANO1 HRAS ANO9 LOC171391 MUC5B PTDSS2 LOC101059906 MUC5AC TSPAN4 LRRC56 SNORA52 PNPLA2 DRD4 CRACR2B MIR210 RNH1 AP2A2 LOC101927503 PHRF1 MUC2 CEND1 LOC143666 MUC6 CHID1 SCT TALDO1 POLR2L RPLP2 SLC25A22
nsv832043 Chr.11:631027 - 758602 on Build GRCh38 Loss TMEM80 EPS8L2 DRD4 TALDO1 DEAF1
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain RASSF7 MIR210HG LRRC56 DRD4 CDHR5 MIR210 IRF7 DEAF1 LMNTD2 PHRF1 LOC143666 HRAS SCT
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion RASSF7 TMEM80 MIR210HG SIGIRR CDHR5 IRF7 DEAF1 CD151 LMNTD2 PIDD1 EPS8L2 PDDC1 PANO1 HRAS ANO9 LOC171391 PTDSS2 LOC101059906 TSPAN4 LRRC56 SNORA52 PNPLA2 DRD4 CRACR2B MIR210 RNH1 B4GALNT4 AP2A2 PHRF1 CEND1 LOC143666 CHID1 SCT TALDO1 POLR2L RPLP2 SLC25A22 PKP3
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain RASSF7 MIR210HG LRRC56 DRD4 CDHR5 MIR210 RNH1 IRF7 DEAF1 LMNTD2 PHRF1 LOC143666 HRAS SCT PTDSS2 LOC101059906
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion RASSF7 TMEM80 MIR210HG CDHR5 IRF7 DEAF1 CD151 LMNTD2 PIDD1 EPS8L2 PDDC1 PANO1 HRAS LOC171391 PTDSS2 LOC101059906 TSPAN4 LRRC56 SNORA52 PNPLA2 DRD4 CRACR2B MIR210 RNH1 PHRF1 CEND1 LOC143666 CHID1 SCT TALDO1 POLR2L RPLP2 SLC25A22
dgv1525n54 Chr.11:647869 - 688312 on Build GRCh38 Loss DEAF1

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More Information


Additional Information:

For this assay, SNP(s) [rs115293558] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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