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See other LRRC56 CNV Assays ›
Gene Symbol
LRRC56
Assay Reference Genome
Location

Chr.11:519126 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03784587_cn
Size
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 115399

Gene Name:

 leucine rich repeat containing 56

Gene Aliases:

 -

Location:

 Chr.11:518967-554916 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 1 - Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LRRC56 XM_011519875.2 XP_011518177.1
XM_011519877.2 XP_011518179.1
XM_017017167.1 XP_016872656.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv552854 Chr.11:511805 - 619789 on Build GRCh38 Loss MIR210 LOC101059906 LMNTD2 IRF7 LRRC56 RASSF7 CDHR5 MIR210HG LOC143666 HRAS PHRF1
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss MIR210 LOC101059906 IFITM1 IRF7 B4GALNT4 PKP3 SIGIRR IFITM3 ANO9 RNH1 LMNTD2 LRRC56 RASSF7 PGGHG IFITM5 CDHR5 MIR210HG IFITM2 LOC143666 HRAS PHRF1 PTDSS2
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss MIR210 TMEM80 MUC6 DEAF1 CRACR2B EPS8L2 SNORA52 MUC5B RNH1 CD151 PIDD1 CDHR5 LOC143666 AP2A2 HRAS PHRF1 LOC101059906 MUC5AC TSPAN4 SLC25A22 LOC171391 MUC2 LOC101927503 IRF7 CEND1 B4GALNT4 PKP3 SIGIRR PANO1 CHID1 TALDO1 SCT ANO9 DRD4 RPLP2 LMNTD2 PDDC1 LRRC56 MIR6744 TOLLIP RASSF7 PNPLA2 MIR210HG POLR2L PTDSS2
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss MIR210 TMEM80 MUC6 DEAF1 CRACR2B EPS8L2 SNORA52 MUC5B RNH1 CD151 PIDD1 CDHR5 LOC143666 AP2A2 HRAS PHRF1 LOC101059906 MUC5AC TSPAN4 SLC25A22 LOC171391 MUC2 LOC101927503 IRF7 CEND1 SIGIRR PANO1 CHID1 TALDO1 SCT ANO9 DRD4 RPLP2 LMNTD2 PDDC1 LRRC56 MIR6744 TOLLIP TOLLIP-AS1 RASSF7 PNPLA2 MIR210HG POLR2L PTDSS2
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion MIR210 TMEM80 DEAF1 CRACR2B EPS8L2 SNORA52 RNH1 CD151 PIDD1 CDHR5 LOC143666 AP2A2 HRAS PHRF1 LOC101059906 TSPAN4 SLC25A22 LOC171391 IRF7 CEND1 B4GALNT4 PKP3 SIGIRR PANO1 CHID1 TALDO1 SCT ANO9 DRD4 RPLP2 LMNTD2 PDDC1 LRRC56 RASSF7 PNPLA2 MIR210HG POLR2L PTDSS2
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain MIR210 LOC101059906 IRF7 DEAF1 SCT DRD4 RNH1 LMNTD2 LRRC56 RASSF7 CDHR5 MIR210HG LOC143666 HRAS PHRF1 PTDSS2
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion MIR210 TMEM80 DEAF1 CRACR2B EPS8L2 SNORA52 RNH1 CD151 PIDD1 CDHR5 LOC143666 HRAS PHRF1 LOC101059906 TSPAN4 SLC25A22 LOC171391 IRF7 CEND1 PANO1 CHID1 TALDO1 SCT DRD4 RPLP2 LMNTD2 PDDC1 LRRC56 RASSF7 PNPLA2 MIR210HG POLR2L PTDSS2
dgv541e59 Chr.11:519152 - 520350 on Build GRCh38 Duplication LRRC56

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More Information


Additional Information:

For this assay, SNP(s) [rs72841204] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

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