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See other LRRC56 CNV Assays ›
Gene Symbol
LRRC56
Assay Reference Genome
Location

Chr.11:543629 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03786798_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 115399

Gene Name:

 leucine rich repeat containing 56

Gene Aliases:

 -

Location:

 Chr.11:518967-554916 on Build GRCh38

Assay Gene Location:

 Within Intron 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LRRC56 NM_198075.3 NP_932341.1
XM_005252775.2 XP_005252832.1
XM_005252776.2 XP_005252833.1
XM_006718132.2 XP_006718195.1
XM_006718133.2 XP_006718196.1
XM_011519875.2 XP_011518177.1
XM_011519876.1 XP_011518178.1
XM_011519877.2 XP_011518179.1
XM_017017167.1 XP_016872656.1
XM_017017168.1 XP_016872657.1
AK024495.1 BAB15785.1
BC016439.1
BC035937.1 AAH35937.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv552854 Chr.11:511805 - 619789 on Build GRCh38 Loss PHRF1 LOC101059906 RASSF7 MIR210 LMNTD2 HRAS LOC143666 LRRC56 IRF7 CDHR5 MIR210HG
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss PHRF1 LOC101059906 RASSF7 ANO9 IFITM5 MIR210 HRAS LRRC56 IRF7 IFITM2 PKP3 SIGIRR CDHR5 PTDSS2 B4GALNT4 IFITM3 LMNTD2 LOC143666 IFITM1 PGGHG RNH1 MIR210HG
nsv951270 Chr.11:528401 - 628100 on Build GRCh38 Deletion PHRF1 LOC101059906 RASSF7 MIR210 LMNTD2 HRAS LOC143666 SCT LRRC56 IRF7 CDHR5 MIR210HG
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss SLC25A22 MUC5B LOC101059906 MIR210 SNORA52 HRAS AP2A2 IRF7 PKP3 PIDD1 PANO1 B4GALNT4 CHID1 DRD4 DEAF1 TOLLIP PNPLA2 RPLP2 CEND1 PDDC1 MIR210HG PHRF1 MIR6744 RASSF7 ANO9 MUC2 MUC6 LRRC56 LOC171391 CRACR2B SIGIRR EPS8L2 CDHR5 PTDSS2 LOC101927503 LMNTD2 LOC143666 POLR2L CD151 MUC5AC SCT TSPAN4 TALDO1 RNH1 TMEM80
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss SLC25A22 MUC5B LOC101059906 MIR210 SNORA52 HRAS AP2A2 IRF7 PIDD1 TOLLIP-AS1 PANO1 CHID1 DRD4 DEAF1 TOLLIP PNPLA2 RPLP2 CEND1 PDDC1 MIR210HG PHRF1 MIR6744 RASSF7 ANO9 MUC2 MUC6 LRRC56 LOC171391 CRACR2B SIGIRR EPS8L2 CDHR5 PTDSS2 LOC101927503 LMNTD2 LOC143666 POLR2L CD151 MUC5AC SCT TSPAN4 TALDO1 RNH1 TMEM80
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain PHRF1 RASSF7 MIR210 HRAS LRRC56 IRF7 CDHR5 LMNTD2 DRD4 LOC143666 SCT DEAF1 MIR210HG
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion SLC25A22 LOC101059906 MIR210 SNORA52 HRAS AP2A2 IRF7 PKP3 PIDD1 PANO1 B4GALNT4 CHID1 DRD4 DEAF1 PNPLA2 RPLP2 CEND1 PDDC1 MIR210HG PHRF1 RASSF7 ANO9 LRRC56 LOC171391 CRACR2B SIGIRR EPS8L2 CDHR5 PTDSS2 LMNTD2 LOC143666 POLR2L CD151 SCT TSPAN4 TALDO1 RNH1 TMEM80
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain PHRF1 LOC101059906 RASSF7 MIR210 HRAS LRRC56 IRF7 CDHR5 PTDSS2 LMNTD2 DRD4 LOC143666 SCT DEAF1 RNH1 MIR210HG
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion SLC25A22 LOC101059906 MIR210 SNORA52 HRAS IRF7 PIDD1 PANO1 CHID1 DRD4 DEAF1 PNPLA2 RPLP2 CEND1 PDDC1 MIR210HG PHRF1 RASSF7 LRRC56 LOC171391 CRACR2B EPS8L2 CDHR5 PTDSS2 LMNTD2 LOC143666 POLR2L CD151 SCT TSPAN4 TALDO1 RNH1 TMEM80
nsv552855 Chr.11:532923 - 545087 on Build GRCh38 Loss HRAS LRRC56

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

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