Hs03786827_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:860277 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625086	Chr.11:860117 - 882352 on Build GRCh38	Loss	CHID1 TSPAN4
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CEND1 AP2A2 CHID1 POLR2L TSPAN4 CD151 LOC171391 PNPLA2 SLC25A22 RPLP2 SNORA52 PIDD1 PDDC1 PANO1 CRACR2B
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MUC2 AP2A2 LOC143666 DEAF1 MUC5B CHID1 TSPAN4 ANO9 TMEM80 SCT LOC101059906 PNPLA2 SLC25A22 CDHR5 RPLP2 MIR210 HRAS PANO1 MIR6744 LMNTD2 CEND1 LRRC56 PTDSS2 EPS8L2 POLR2L TOLLIP RASSF7 CD151 LOC171391 IRF7 PHRF1 RNH1 SIGIRR TOLLIP-AS1 TALDO1 LOC101927503 SNORA52 PIDD1 PDDC1 MUC5AC DRD4 MIR210HG CRACR2B MUC6
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	AP2A2 LOC143666 DEAF1 CHID1 TSPAN4 ANO9 TMEM80 SCT LOC101059906 PNPLA2 SLC25A22 CDHR5 RPLP2 MIR210 HRAS PANO1 LMNTD2 CEND1 LRRC56 PTDSS2 EPS8L2 B4GALNT4 POLR2L RASSF7 CD151 LOC171391 IRF7 PHRF1 RNH1 SIGIRR TALDO1 SNORA52 PIDD1 PDDC1 PKP3 DRD4 MIR210HG CRACR2B
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LOC143666 DEAF1 CHID1 TSPAN4 TMEM80 SCT LOC101059906 PNPLA2 SLC25A22 CDHR5 RPLP2 MIR210 HRAS PANO1 LMNTD2 CEND1 LRRC56 PTDSS2 EPS8L2 POLR2L RASSF7 CD151 LOC171391 IRF7 PHRF1 RNH1 TALDO1 SNORA52 PIDD1 PDDC1 DRD4 MIR210HG CRACR2B
esv3625084	Chr.11:856965 - 861642 on Build GRCh38	Loss	TSPAN4
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CEND1 CHID1 POLR2L TSPAN4 CD151 LOC171391 PNPLA2 SLC25A22 RPLP2 SNORA52 PIDD1 PDDC1 PANO1 CRACR2B
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MUC2 AP2A2 LOC143666 DEAF1 MUC5B CHID1 TSPAN4 ANO9 TMEM80 SCT LOC101059906 PNPLA2 SLC25A22 CDHR5 RPLP2 MIR210 HRAS PANO1 MIR6744 LMNTD2 CEND1 LRRC56 PTDSS2 EPS8L2 B4GALNT4 POLR2L TOLLIP RASSF7 CD151 LOC171391 IRF7 PHRF1 RNH1 SIGIRR TALDO1 LOC101927503 SNORA52 PIDD1 PDDC1 PKP3 MUC5AC DRD4 MIR210HG CRACR2B MUC6
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	AP2A2 CHID1 TSPAN4 MUC6
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PNPLA2 AP2A2 CHID1 RPLP2 POLR2L SNORA52 PIDD1 TSPAN4 CD151 CRACR2B
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CEND1 CHID1 POLR2L TSPAN4 CD151 LOC171391 PNPLA2 SLC25A22 RPLP2 SNORA52 PIDD1 PDDC1 PANO1 CRACR2B
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	PNPLA2 CHID1 POLR2L TSPAN4 CD151 CRACR2B
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CEND1 CHID1 POLR2L TSPAN4 CD151 LOC171391 PNPLA2 SLC25A22 TALDO1 RPLP2 SNORA52 PIDD1 PDDC1 PANO1 CRACR2B

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding