Hs03786827_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:860277 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625087	Chr.11:860117 - 882352 on Build GRCh38	Gain	TSPAN4 CHID1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	SLC25A22 RPLP2 PDDC1 PIDD1 PNPLA2 CHID1 POLR2L SNORA52 TSPAN4 LOC171391 PANO1 CRACR2B CD151 AP2A2 CEND1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MUC2 SLC25A22 PTDSS2 RPLP2 CHID1 LOC101927503 POLR2L SIGIRR TSPAN4 DRD4 CDHR5 TOLLIP-AS1 LOC171391 PANO1 CRACR2B MIR210 CD151 CEND1 MIR6744 MUC6 HRAS PHRF1 LRRC56 MUC5AC PDDC1 PIDD1 PNPLA2 SNORA52 DEAF1 TOLLIP RNH1 ANO9 EPS8L2 RASSF7 LOC101059906 TMEM80 IRF7 SCT LMNTD2 LOC143666 AP2A2 TALDO1 MUC5B MIR210HG
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 CHID1 POLR2L
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	B4GALNT4 PKP3 SLC25A22 PTDSS2 RPLP2 CHID1 POLR2L SIGIRR TSPAN4 DRD4 CDHR5 LOC171391 PANO1 CRACR2B MIR210 CD151 CEND1 HRAS PHRF1 LRRC56 PDDC1 PIDD1 PNPLA2 SNORA52 DEAF1 RNH1 ANO9 EPS8L2 RASSF7 LOC101059906 TMEM80 IRF7 SCT LMNTD2 LOC143666 AP2A2 TALDO1 MIR210HG
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	SLC25A22 PTDSS2 RPLP2 CHID1 POLR2L TSPAN4 DRD4 CDHR5 LOC171391 PANO1 CRACR2B MIR210 CD151 CEND1 HRAS PHRF1 LRRC56 PDDC1 PIDD1 PNPLA2 SNORA52 DEAF1 RNH1 EPS8L2 RASSF7 LOC101059906 TMEM80 IRF7 SCT LMNTD2 LOC143666 TALDO1 MIR210HG
esv3625084	Chr.11:856965 - 861642 on Build GRCh38	Loss	TSPAN4
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	SLC25A22 RPLP2 PDDC1 PIDD1 PNPLA2 CHID1 POLR2L SNORA52 TSPAN4 LOC171391 PANO1 CRACR2B CD151 CEND1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MUC2 B4GALNT4 PKP3 SLC25A22 PTDSS2 RPLP2 CHID1 LOC101927503 POLR2L SIGIRR TSPAN4 DRD4 CDHR5 LOC171391 PANO1 CRACR2B MIR210 CD151 CEND1 MIR6744 MUC6 HRAS PHRF1 LRRC56 MUC5AC PDDC1 PIDD1 PNPLA2 SNORA52 DEAF1 TOLLIP RNH1 ANO9 EPS8L2 RASSF7 LOC101059906 TMEM80 IRF7 SCT LMNTD2 LOC143666 AP2A2 TALDO1 MUC5B MIR210HG
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	MUC6 TSPAN4 CHID1 AP2A2
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	TSPAN4 RPLP2 PIDD1 CRACR2B PNPLA2 CHID1 CD151 POLR2L AP2A2 SNORA52
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	SLC25A22 RPLP2 PDDC1 PIDD1 PNPLA2 CHID1 POLR2L SNORA52 TSPAN4 LOC171391 PANO1 CRACR2B CD151 CEND1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	TSPAN4 CRACR2B PNPLA2 CHID1 CD151 POLR2L
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	SLC25A22 RPLP2 PDDC1 PIDD1 PNPLA2 CHID1 POLR2L SNORA52 TSPAN4 LOC171391 PANO1 CRACR2B CD151 TALDO1 CEND1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding