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See other TSPAN4 CNV Assays ›
Gene Symbol
TSPAN4
Assay Reference Genome
Location

Chr.11:843295 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03788252_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7106

Gene Name:

 tetraspanin 4

Gene Aliases:

 NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4

Location:

 Chr.11:842824-867116 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TSPAN4 NM_001025235.1 NP_001020406.1
NM_001025236.1 NP_001020407.1
NM_001025238.1 NP_001020409.1
NM_001025239.1 NP_001020410.1
NM_003271.4 NP_003262.1
XM_011520336.1 1 157 XP_011518638.1
XM_011520338.1 XP_011518640.1
XM_011520341.2 XP_011518643.1
AK291089.1
AL543667.3
BC000389.2 AAH00389.1
BF530006.1
BG752017.1
BM755435.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv1013n100 Chr.11:772982 - 933569 on Build GRCh38 Gain CRACR2B PNPLA2 POLR2L LOC171391 CHID1 CEND1 SLC25A22 CD151 SNORA52 RPLP2 PIDD1 PDDC1 PANO1 AP2A2 TSPAN4
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss HRAS IRF7 MUC5B LOC171391 CDHR5 CHID1 LOC101927503 TOLLIP TALDO1 PHRF1 EPS8L2 SLC25A22 RPLP2 PIDD1 PDDC1 SIGIRR LRRC56 SCT ANO9 PTDSS2 TSPAN4 DEAF1 MUC6 LOC143666 LMNTD2 CRACR2B PNPLA2 MIR210HG MUC5AC POLR2L TMEM80 RNH1 RASSF7 CEND1 CD151 MIR210 SNORA52 DRD4 MUC2 PANO1 MIR6744 LOC101059906 TOLLIP-AS1 AP2A2
nsv552887 Chr.11:841284 - 876755 on Build GRCh38 Loss POLR2L CHID1 TSPAN4
nsv8760 Chr.11:840951 - 852059 on Build GRCh38 Loss POLR2L TSPAN4
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion HRAS IRF7 LOC171391 CDHR5 CHID1 TALDO1 PHRF1 EPS8L2 PKP3 SLC25A22 RPLP2 PIDD1 PDDC1 SIGIRR LRRC56 SCT ANO9 PTDSS2 TSPAN4 DEAF1 LOC143666 LMNTD2 CRACR2B PNPLA2 MIR210HG POLR2L TMEM80 RNH1 RASSF7 CEND1 B4GALNT4 CD151 MIR210 SNORA52 DRD4 PANO1 LOC101059906 AP2A2
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion HRAS IRF7 LOC171391 CDHR5 CHID1 TALDO1 PHRF1 EPS8L2 SLC25A22 RPLP2 PIDD1 PDDC1 LRRC56 SCT PTDSS2 TSPAN4 DEAF1 LOC143666 LMNTD2 CRACR2B PNPLA2 MIR210HG POLR2L TMEM80 RNH1 RASSF7 CEND1 CD151 MIR210 SNORA52 DRD4 PANO1 LOC101059906
nsv552871 Chr.11:766479 - 870446 on Build GRCh38 Loss CRACR2B PNPLA2 POLR2L LOC171391 CHID1 CEND1 SLC25A22 CD151 SNORA52 RPLP2 PIDD1 PDDC1 PANO1 TSPAN4
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss HRAS IRF7 MUC5B LOC171391 CDHR5 CHID1 LOC101927503 TOLLIP TALDO1 PHRF1 EPS8L2 PKP3 SLC25A22 RPLP2 PIDD1 PDDC1 SIGIRR LRRC56 SCT ANO9 PTDSS2 TSPAN4 DEAF1 MUC6 LOC143666 LMNTD2 CRACR2B PNPLA2 MIR210HG MUC5AC POLR2L TMEM80 RNH1 RASSF7 CEND1 B4GALNT4 CD151 MIR210 SNORA52 DRD4 MUC2 PANO1 MIR6744 LOC101059906 AP2A2
dgv1526n54 Chr.11:812533 - 843713 on Build GRCh38 Gain CD151 CRACR2B PNPLA2 POLR2L RPLP2 TSPAN4
nsv552874 Chr.11:823590 - 843713 on Build GRCh38 Gain CD151 CRACR2B PNPLA2 POLR2L TSPAN4
nsv552888 Chr.11:841959 - 846738 on Build GRCh38 Loss POLR2L TSPAN4
nsv832044 Chr.11:809019 - 938308 on Build GRCh38 Loss CD151 CRACR2B PNPLA2 SNORA52 POLR2L RPLP2 PIDD1 CHID1 AP2A2 TSPAN4
nsv1040044 Chr.11:776335 - 900929 on Build GRCh38 Gain+Loss CRACR2B PNPLA2 POLR2L LOC171391 CHID1 CEND1 SLC25A22 CD151 SNORA52 RPLP2 PIDD1 PDDC1 PANO1 TSPAN4
nsv1048774 Chr.11:816471 - 900929 on Build GRCh38 Gain CD151 CRACR2B PNPLA2 POLR2L CHID1 TSPAN4
nsv951272 Chr.11:751201 - 911500 on Build GRCh38 Deletion CRACR2B PNPLA2 POLR2L LOC171391 CHID1 TALDO1 CEND1 SLC25A22 CD151 SNORA52 RPLP2 PIDD1 PDDC1 PANO1 TSPAN4

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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