Hs03788252_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:843295 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_011520336.1	1	157	XP_011518638.1
	XM_011520338.1			XP_011518640.1
	XM_011520341.2			XP_011518643.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BF530006.1
	BG752017.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	TSPAN4 CD151 AP2A2 CHID1 LOC171391 CRACR2B SLC25A22 PIDD1 PNPLA2 PANO1 PDDC1 CEND1 RPLP2 SNORA52 POLR2L
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 CHID1 POLR2L
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LMNTD2 TSPAN4 HRAS CD151 AP2A2 LOC101059906 TOLLIP-AS1 RASSF7 TOLLIP MUC5AC MUC5B LOC143666 PIDD1 RNH1 LOC101927503 ANO9 DEAF1 PTDSS2 PHRF1 PDDC1 MUC2 SNORA52 POLR2L CHID1 LOC171391 EPS8L2 CRACR2B TMEM80 IRF7 MUC6 SLC25A22 DRD4 MIR210 PNPLA2 PANO1 SCT MIR6744 TALDO1 LRRC56 CEND1 RPLP2 MIR210HG SIGIRR CDHR5
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	TSPAN4 POLR2L
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LMNTD2 TSPAN4 HRAS CD151 AP2A2 LOC101059906 RASSF7 LOC143666 PIDD1 RNH1 ANO9 DEAF1 PTDSS2 PHRF1 PDDC1 SNORA52 POLR2L CHID1 LOC171391 EPS8L2 PKP3 CRACR2B B4GALNT4 TMEM80 IRF7 SLC25A22 DRD4 MIR210 PNPLA2 PANO1 SCT TALDO1 LRRC56 CEND1 RPLP2 MIR210HG SIGIRR CDHR5
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LMNTD2 TSPAN4 HRAS CD151 LOC101059906 RASSF7 LOC143666 PIDD1 RNH1 DEAF1 PTDSS2 PHRF1 PDDC1 SNORA52 POLR2L CHID1 LOC171391 EPS8L2 CRACR2B TMEM80 IRF7 SLC25A22 DRD4 MIR210 PNPLA2 PANO1 SCT TALDO1 LRRC56 CEND1 RPLP2 MIR210HG CDHR5
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	TSPAN4 CD151 CHID1 LOC171391 CRACR2B SLC25A22 PIDD1 PNPLA2 PANO1 PDDC1 CEND1 RPLP2 SNORA52 POLR2L
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LMNTD2 TSPAN4 HRAS CD151 AP2A2 LOC101059906 RASSF7 TOLLIP MUC5AC MUC5B LOC143666 PIDD1 RNH1 LOC101927503 ANO9 DEAF1 PTDSS2 PHRF1 PDDC1 MUC2 SNORA52 POLR2L CHID1 LOC171391 EPS8L2 PKP3 CRACR2B B4GALNT4 TMEM80 IRF7 MUC6 SLC25A22 DRD4 MIR210 PNPLA2 PANO1 SCT MIR6744 TALDO1 LRRC56 CEND1 RPLP2 MIR210HG SIGIRR CDHR5
dgv1526n54	Chr.11:812533 - 843713 on Build GRCh38	Gain	TSPAN4 CD151 PNPLA2 CRACR2B RPLP2 POLR2L
nsv552874	Chr.11:823590 - 843713 on Build GRCh38	Gain	TSPAN4 CD151 PNPLA2 CRACR2B POLR2L
nsv552888	Chr.11:841959 - 846738 on Build GRCh38	Loss	TSPAN4 POLR2L
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PIDD1 TSPAN4 CD151 PNPLA2 AP2A2 CHID1 CRACR2B RPLP2 SNORA52 POLR2L
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	TSPAN4 CD151 CHID1 LOC171391 CRACR2B SLC25A22 PIDD1 PNPLA2 PANO1 PDDC1 CEND1 RPLP2 SNORA52 POLR2L
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	TSPAN4 CD151 PNPLA2 CHID1 CRACR2B POLR2L
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	TSPAN4 CD151 CHID1 LOC171391 CRACR2B SLC25A22 PIDD1 PNPLA2 PANO1 TALDO1 PDDC1 CEND1 RPLP2 SNORA52 POLR2L

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding