Hs03790699_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:851185 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CEND1 PIDD1 CHID1 LOC171391 POLR2L CRACR2B SNORA52 PANO1 TSPAN4 PDDC1 PNPLA2 CD151 RPLP2 SLC25A22
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LOC143666 HRAS PHRF1 MIR210 LOC171391 LOC101927503 SIGIRR MUC5AC POLR2L IRF7 CRACR2B CDHR5 ANO9 PANO1 TSPAN4 EPS8L2 MUC2 LRRC56 SCT CD151 RPLP2 LMNTD2 DEAF1 MUC6 RNH1 CEND1 PIDD1 CHID1 PTDSS2 AP2A2 SNORA52 MIR6744 PDDC1 PNPLA2 MUC5B TALDO1 B4GALNT4 DRD4 PKP3 TMEM80 LOC101059906 TOLLIP SLC25A22 RASSF7 MIR210HG
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CEND1 PIDD1 CHID1 LOC171391 POLR2L CRACR2B AP2A2 SNORA52 PANO1 TSPAN4 PDDC1 PNPLA2 CD151 RPLP2 SLC25A22
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LOC143666 HRAS PHRF1 MIR210 LOC171391 LOC101927503 SIGIRR MUC5AC POLR2L IRF7 CRACR2B CDHR5 ANO9 PANO1 TSPAN4 EPS8L2 MUC2 LRRC56 SCT CD151 RPLP2 LMNTD2 DEAF1 MUC6 RNH1 CEND1 PIDD1 CHID1 PTDSS2 AP2A2 SNORA52 MIR6744 PDDC1 PNPLA2 MUC5B TALDO1 DRD4 TMEM80 LOC101059906 TOLLIP SLC25A22 TOLLIP-AS1 RASSF7 MIR210HG
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PNPLA2 PIDD1 CHID1 CD151 POLR2L RPLP2 CRACR2B AP2A2 SNORA52 TSPAN4
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LOC143666 HRAS PHRF1 MIR210 LOC171391 SIGIRR POLR2L IRF7 CRACR2B CDHR5 ANO9 PANO1 TSPAN4 EPS8L2 LRRC56 SCT CD151 RPLP2 LMNTD2 DEAF1 RNH1 CEND1 PIDD1 CHID1 PTDSS2 AP2A2 SNORA52 PDDC1 PNPLA2 TALDO1 B4GALNT4 DRD4 PKP3 TMEM80 LOC101059906 SLC25A22 RASSF7 MIR210HG
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CEND1 PIDD1 CHID1 LOC171391 POLR2L CRACR2B SNORA52 PANO1 TSPAN4 PDDC1 PNPLA2 CD151 RPLP2 SLC25A22
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LOC143666 HRAS PHRF1 MIR210 LOC171391 POLR2L IRF7 CRACR2B CDHR5 PANO1 TSPAN4 EPS8L2 LRRC56 SCT CD151 RPLP2 LMNTD2 DEAF1 RNH1 CEND1 PIDD1 CHID1 PTDSS2 SNORA52 PDDC1 PNPLA2 TALDO1 DRD4 TMEM80 LOC101059906 SLC25A22 RASSF7 MIR210HG
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	PNPLA2 CHID1 CD151 POLR2L CRACR2B TSPAN4
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CEND1 PIDD1 CHID1 LOC171391 POLR2L CRACR2B SNORA52 PANO1 TSPAN4 PDDC1 PNPLA2 TALDO1 CD151 RPLP2 SLC25A22

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding