Hs03790699_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:851185 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CRACR2B CEND1 POLR2L TSPAN4 PDDC1 SLC25A22 RPLP2 CD151 PANO1 SNORA52 PIDD1 LOC171391 CHID1 PNPLA2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CRACR2B IRF7 PTDSS2 MUC5B LMNTD2 TSPAN4 PKP3 MIR210 HRAS AP2A2 SLC25A22 CD151 PANO1 LOC101059906 SIGIRR SNORA52 CDHR5 TALDO1 RNH1 LOC143666 CHID1 PNPLA2 EPS8L2 TMEM80 RASSF7 B4GALNT4 CEND1 ANO9 POLR2L LOC101927503 LRRC56 SCT PDDC1 DRD4 RPLP2 PHRF1 DEAF1 MIR6744 PIDD1 LOC171391 MIR210HG MUC6 MUC5AC MUC2 TOLLIP
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CRACR2B CEND1 POLR2L TSPAN4 PDDC1 AP2A2 SLC25A22 RPLP2 CD151 PANO1 SNORA52 PIDD1 LOC171391 CHID1 PNPLA2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CRACR2B IRF7 PTDSS2 MUC5B LMNTD2 TSPAN4 MIR210 HRAS TOLLIP-AS1 AP2A2 SLC25A22 CD151 PANO1 LOC101059906 SIGIRR SNORA52 CDHR5 TALDO1 RNH1 LOC143666 CHID1 PNPLA2 EPS8L2 TMEM80 RASSF7 CEND1 ANO9 POLR2L LOC101927503 LRRC56 SCT PDDC1 DRD4 RPLP2 PHRF1 DEAF1 MIR6744 PIDD1 LOC171391 MIR210HG MUC6 MUC5AC MUC2 TOLLIP
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CRACR2B RPLP2 CD151 SNORA52 PIDD1 POLR2L TSPAN4 CHID1 PNPLA2 AP2A2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CRACR2B CEND1 POLR2L TSPAN4 PDDC1 SLC25A22 RPLP2 CD151 PANO1 SNORA52 PIDD1 LOC171391 CHID1 PNPLA2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CRACR2B IRF7 PTDSS2 LMNTD2 TSPAN4 PKP3 MIR210 HRAS AP2A2 SLC25A22 CD151 PANO1 LOC101059906 SIGIRR SNORA52 CDHR5 TALDO1 RNH1 LOC143666 CHID1 PNPLA2 EPS8L2 TMEM80 RASSF7 B4GALNT4 CEND1 ANO9 POLR2L LRRC56 SCT PDDC1 DRD4 RPLP2 PHRF1 DEAF1 PIDD1 LOC171391 MIR210HG
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CRACR2B CD151 POLR2L TSPAN4 CHID1 PNPLA2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CRACR2B IRF7 PTDSS2 LMNTD2 TSPAN4 MIR210 HRAS SLC25A22 CD151 PANO1 LOC101059906 SNORA52 CDHR5 TALDO1 RNH1 LOC143666 CHID1 PNPLA2 EPS8L2 TMEM80 RASSF7 CEND1 POLR2L LRRC56 SCT PDDC1 DRD4 RPLP2 PHRF1 DEAF1 PIDD1 LOC171391 MIR210HG
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CRACR2B CEND1 POLR2L TSPAN4 PDDC1 SLC25A22 RPLP2 CD151 PANO1 SNORA52 PIDD1 TALDO1 LOC171391 CHID1 PNPLA2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding