Hs03792630_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:862129 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625086	Chr.11:860117 - 882352 on Build GRCh38	Loss	CHID1 TSPAN4
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CHID1 POLR2L CEND1 CD151 CRACR2B AP2A2 PNPLA2 RPLP2 SLC25A22 PIDD1 PDDC1 SNORA52 LOC171391 TSPAN4 PANO1
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	DEAF1 MIR6744 LOC143666 POLR2L MIR210 MUC2 CDHR5 TMEM80 PHRF1 PNPLA2 RPLP2 RASSF7 PTDSS2 SLC25A22 PIDD1 SNORA52 LOC171391 HRAS SIGIRR IRF7 TOLLIP ANO9 SCT PANO1 TOLLIP-AS1 LOC101059906 CHID1 TALDO1 RNH1 DRD4 EPS8L2 LOC101927503 CEND1 CD151 CRACR2B AP2A2 MUC5AC PDDC1 MIR210HG TSPAN4 MUC5B LRRC56 LMNTD2 MUC6
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	DEAF1 LOC143666 POLR2L MIR210 CDHR5 TMEM80 PHRF1 PNPLA2 RPLP2 RASSF7 PTDSS2 SLC25A22 PIDD1 B4GALNT4 SNORA52 LOC171391 HRAS SIGIRR IRF7 ANO9 SCT PANO1 LOC101059906 CHID1 TALDO1 RNH1 DRD4 EPS8L2 CEND1 CD151 CRACR2B PKP3 AP2A2 PDDC1 MIR210HG TSPAN4 LRRC56 LMNTD2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	DEAF1 LOC143666 POLR2L MIR210 CDHR5 TMEM80 PHRF1 PNPLA2 RPLP2 RASSF7 PTDSS2 SLC25A22 PIDD1 SNORA52 LOC171391 HRAS IRF7 SCT PANO1 LOC101059906 CHID1 TALDO1 RNH1 DRD4 EPS8L2 CEND1 CD151 CRACR2B PDDC1 MIR210HG TSPAN4 LRRC56 LMNTD2
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CHID1 POLR2L CEND1 CD151 CRACR2B PNPLA2 RPLP2 SLC25A22 PIDD1 PDDC1 SNORA52 LOC171391 TSPAN4 PANO1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	DEAF1 MIR6744 LOC143666 POLR2L MIR210 MUC2 CDHR5 TMEM80 PHRF1 PNPLA2 RPLP2 RASSF7 PTDSS2 SLC25A22 PIDD1 B4GALNT4 SNORA52 LOC171391 HRAS SIGIRR IRF7 TOLLIP ANO9 SCT PANO1 LOC101059906 CHID1 TALDO1 RNH1 DRD4 EPS8L2 LOC101927503 CEND1 CD151 CRACR2B PKP3 AP2A2 MUC5AC PDDC1 MIR210HG TSPAN4 MUC5B LRRC56 LMNTD2 MUC6
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	CHID1 TSPAN4 AP2A2 MUC6
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PNPLA2 RPLP2 CHID1 PIDD1 SNORA52 POLR2L CD151 CRACR2B TSPAN4 AP2A2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CHID1 POLR2L CEND1 CD151 CRACR2B PNPLA2 RPLP2 SLC25A22 PIDD1 PDDC1 SNORA52 LOC171391 TSPAN4 PANO1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	PNPLA2 CHID1 POLR2L CD151 CRACR2B TSPAN4
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CHID1 TALDO1 POLR2L CEND1 CD151 CRACR2B PNPLA2 RPLP2 SLC25A22 PIDD1 PDDC1 SNORA52 LOC171391 TSPAN4 PANO1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding