Hs03792630_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:862129 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625087	Chr.11:860117 - 882352 on Build GRCh38	Gain	TSPAN4 CHID1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	AP2A2 PNPLA2 PANO1 LOC171391 CD151 CEND1 TSPAN4 RPLP2 CRACR2B POLR2L SLC25A22 PDDC1 SNORA52 PIDD1 CHID1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	AP2A2 DEAF1 LMNTD2 PANO1 DRD4 LOC171391 MIR6744 SCT CEND1 TMEM80 EPS8L2 CRACR2B RNH1 SIGIRR POLR2L SLC25A22 RASSF7 LRRC56 CDHR5 TALDO1 MIR210HG MIR210 MUC2 MUC5AC LOC101927503 PNPLA2 MUC5B CD151 TSPAN4 RPLP2 PHRF1 ANO9 PTDSS2 IRF7 TOLLIP-AS1 PDDC1 SNORA52 LOC143666 MUC6 PIDD1 CHID1 LOC101059906 HRAS TOLLIP
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	AP2A2 DEAF1 LMNTD2 PANO1 DRD4 LOC171391 SCT CEND1 TMEM80 EPS8L2 CRACR2B RNH1 SIGIRR POLR2L SLC25A22 RASSF7 LRRC56 CDHR5 TALDO1 MIR210HG MIR210 B4GALNT4 PNPLA2 CD151 TSPAN4 RPLP2 PHRF1 ANO9 PTDSS2 IRF7 PDDC1 SNORA52 LOC143666 PIDD1 CHID1 LOC101059906 HRAS PKP3
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	DEAF1 LMNTD2 PANO1 DRD4 LOC171391 SCT CEND1 TMEM80 EPS8L2 CRACR2B RNH1 POLR2L SLC25A22 RASSF7 LRRC56 CDHR5 TALDO1 MIR210HG MIR210 PNPLA2 CD151 TSPAN4 RPLP2 PHRF1 PTDSS2 IRF7 PDDC1 SNORA52 LOC143666 PIDD1 CHID1 LOC101059906 HRAS
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	PNPLA2 PANO1 LOC171391 CD151 CEND1 TSPAN4 RPLP2 CRACR2B POLR2L SLC25A22 PDDC1 SNORA52 PIDD1 CHID1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	AP2A2 DEAF1 LMNTD2 PANO1 DRD4 LOC171391 MIR6744 SCT CEND1 TMEM80 EPS8L2 CRACR2B RNH1 SIGIRR POLR2L SLC25A22 RASSF7 LRRC56 CDHR5 TALDO1 MIR210HG MIR210 MUC2 MUC5AC LOC101927503 B4GALNT4 PNPLA2 MUC5B CD151 TSPAN4 RPLP2 PHRF1 ANO9 PTDSS2 IRF7 PDDC1 SNORA52 LOC143666 MUC6 PIDD1 CHID1 LOC101059906 HRAS PKP3 TOLLIP
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	AP2A2 TSPAN4 MUC6 CHID1
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	AP2A2 POLR2L PNPLA2 CD151 SNORA52 TSPAN4 RPLP2 CRACR2B PIDD1 CHID1
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	PNPLA2 PANO1 LOC171391 CD151 CEND1 TSPAN4 RPLP2 CRACR2B POLR2L SLC25A22 PDDC1 SNORA52 PIDD1 CHID1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	POLR2L PNPLA2 CD151 TSPAN4 CRACR2B CHID1
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	PNPLA2 PANO1 LOC171391 CD151 CEND1 TSPAN4 RPLP2 CRACR2B POLR2L SLC25A22 PDDC1 SNORA52 TALDO1 PIDD1 CHID1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding