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Gene Symbol
TSPAN4
Assay Reference Genome
Location

Chr.11:858103 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03793000_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7106

Gene Name:

 tetraspanin 4

Gene Aliases:

 NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4

Location:

 Chr.11:842824-867116 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TSPAN4 NM_001025234.1 NP_001020405.1
NM_001025235.1 NP_001020406.1
NM_001025236.1 NP_001020407.1
NM_001025237.1 NP_001020408.1
NM_001025238.1 NP_001020409.1
NM_001025239.1 NP_001020410.1
NM_003271.4 NP_003262.1
XM_005253102.1 XP_005253159.1
XM_005253104.1 XP_005253161.1
XM_011520336.1 XP_011518638.1
XM_011520337.2 XP_011518639.1
XM_011520338.1 XP_011518640.1
XM_011520339.2 XP_011518641.1
XM_011520340.2 XP_011518642.1
XM_011520341.2 XP_011518643.1
AF022813.1 AAC51864.1
AF054841.1 AAC69717.1
AK126456.1
AK291089.1
AL543667.3
BC000389.2 AAH00389.1
BC019314.2 AAH19314.1
BC093031.1 AAH93031.1
BF530006.1
BG752017.1
BI820547.1
BM755435.1
BT006776.1 AAP35422.1
CR457108.1 CAG33389.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv1013n100 Chr.11:772982 - 933569 on Build GRCh38 Gain CHID1 CEND1 CRACR2B TSPAN4 PDDC1 PANO1 PIDD1 CD151 LOC171391 SLC25A22 AP2A2 POLR2L PNPLA2 SNORA52 RPLP2
nsv552887 Chr.11:841284 - 876755 on Build GRCh38 Loss CHID1 POLR2L TSPAN4
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss SCT RNH1 CRACR2B PHRF1 DRD4 MUC5B TMEM80 RASSF7 MIR210HG TSPAN4 PDDC1 SIGIRR HRAS LOC143666 PIDD1 MIR210 LOC171391 DEAF1 PNPLA2 CDHR5 SNORA52 RPLP2 CHID1 TOLLIP CEND1 LOC101059906 ANO9 TOLLIP-AS1 IRF7 MIR6744 PANO1 CD151 LRRC56 PTDSS2 EPS8L2 SLC25A22 AP2A2 POLR2L MUC5AC TALDO1 MUC2 MUC6 LOC101927503 LMNTD2
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion SCT RNH1 B4GALNT4 CRACR2B PHRF1 DRD4 TMEM80 RASSF7 MIR210HG TSPAN4 PDDC1 SIGIRR HRAS LOC143666 PIDD1 MIR210 LOC171391 DEAF1 PNPLA2 CDHR5 SNORA52 RPLP2 CHID1 CEND1 LOC101059906 PKP3 ANO9 IRF7 PANO1 CD151 LRRC56 PTDSS2 EPS8L2 SLC25A22 AP2A2 POLR2L TALDO1 LMNTD2
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion SCT RNH1 CRACR2B PHRF1 DRD4 TMEM80 RASSF7 MIR210HG TSPAN4 PDDC1 HRAS LOC143666 PIDD1 MIR210 LOC171391 DEAF1 PNPLA2 CDHR5 SNORA52 RPLP2 CHID1 CEND1 LOC101059906 IRF7 PANO1 CD151 LRRC56 PTDSS2 EPS8L2 SLC25A22 POLR2L TALDO1 LMNTD2
esv3625084 Chr.11:856965 - 861642 on Build GRCh38 Loss TSPAN4
nsv552871 Chr.11:766479 - 870446 on Build GRCh38 Loss CHID1 CEND1 CRACR2B TSPAN4 PDDC1 PANO1 PIDD1 CD151 LOC171391 SLC25A22 POLR2L PNPLA2 SNORA52 RPLP2
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss SCT RNH1 B4GALNT4 CRACR2B PHRF1 DRD4 MUC5B TMEM80 RASSF7 MIR210HG TSPAN4 PDDC1 SIGIRR HRAS LOC143666 PIDD1 MIR210 LOC171391 DEAF1 PNPLA2 CDHR5 SNORA52 RPLP2 CHID1 TOLLIP CEND1 LOC101059906 PKP3 ANO9 IRF7 MIR6744 PANO1 CD151 LRRC56 PTDSS2 EPS8L2 SLC25A22 AP2A2 POLR2L MUC5AC TALDO1 MUC2 MUC6 LOC101927503 LMNTD2
dgv175e214 Chr.11:851409 - 1043855 on Build GRCh38 Gain CHID1 AP2A2 MUC6 TSPAN4
nsv832044 Chr.11:809019 - 938308 on Build GRCh38 Loss PIDD1 CD151 CHID1 CRACR2B AP2A2 POLR2L PNPLA2 SNORA52 TSPAN4 RPLP2
nsv1040044 Chr.11:776335 - 900929 on Build GRCh38 Gain+Loss CHID1 CEND1 CRACR2B TSPAN4 PDDC1 PANO1 PIDD1 CD151 LOC171391 SLC25A22 POLR2L PNPLA2 SNORA52 RPLP2
nsv1048774 Chr.11:816471 - 900929 on Build GRCh38 Gain CD151 CHID1 CRACR2B POLR2L PNPLA2 TSPAN4
nsv951272 Chr.11:751201 - 911500 on Build GRCh38 Deletion CHID1 CEND1 CRACR2B TSPAN4 PDDC1 PANO1 PIDD1 CD151 LOC171391 SLC25A22 POLR2L PNPLA2 TALDO1 SNORA52 RPLP2

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More Information


Additional Information:

For this assay, SNP(s) [rs114681244] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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