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Gene Symbol
TSPAN4
Assay Reference Genome
Location

Chr.11:858103 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03793000_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7106

Gene Name:

 tetraspanin 4

Gene Aliases:

 NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4

Location:

 Chr.11:842824-867116 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TSPAN4 NM_001025234.1 NP_001020405.1
NM_001025235.1 NP_001020406.1
NM_001025236.1 NP_001020407.1
NM_001025237.1 NP_001020408.1
NM_001025238.1 NP_001020409.1
NM_001025239.1 NP_001020410.1
NM_003271.4 NP_003262.1
XM_005253102.1 XP_005253159.1
XM_005253104.1 XP_005253161.1
XM_011520336.1 XP_011518638.1
XM_011520337.2 XP_011518639.1
XM_011520338.1 XP_011518640.1
XM_011520339.2 XP_011518641.1
XM_011520340.2 XP_011518642.1
XM_011520341.2 XP_011518643.1
AF022813.1 AAC51864.1
AF054841.1 AAC69717.1
AK126456.1
AK291089.1
AL543667.3
BC000389.2 AAH00389.1
BC019314.2 AAH19314.1
BC093031.1 AAH93031.1
BF530006.1
BG752017.1
BI820547.1
BM755435.1
BT006776.1 AAP35422.1
CR457108.1 CAG33389.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv1013n100 Chr.11:772982 - 933569 on Build GRCh38 Gain PNPLA2 AP2A2 PANO1 PDDC1 LOC171391 SNORA52 TSPAN4 POLR2L PIDD1 CD151 CHID1 RPLP2 SLC25A22 CEND1 CRACR2B
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss MUC2 TOLLIP-AS1 LRRC56 TALDO1 AP2A2 EPS8L2 PANO1 RASSF7 PTDSS2 IRF7 LMNTD2 LOC171391 SNORA52 ANO9 PHRF1 LOC101927503 SIGIRR MUC5B DRD4 MUC6 CHID1 SLC25A22 CRACR2B PNPLA2 PDDC1 SCT MUC5AC RNH1 MIR210HG MIR210 TSPAN4 POLR2L HRAS PIDD1 CD151 TOLLIP TMEM80 RPLP2 DEAF1 CDHR5 LOC143666 MIR6744 LOC101059906 CEND1
nsv552887 Chr.11:841284 - 876755 on Build GRCh38 Loss POLR2L CHID1 TSPAN4
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion LRRC56 TALDO1 AP2A2 EPS8L2 PANO1 RASSF7 PTDSS2 IRF7 LMNTD2 LOC171391 PKP3 SNORA52 ANO9 PHRF1 B4GALNT4 SIGIRR DRD4 CHID1 SLC25A22 CRACR2B PNPLA2 PDDC1 SCT RNH1 MIR210HG MIR210 TSPAN4 POLR2L HRAS PIDD1 CD151 TMEM80 RPLP2 DEAF1 CDHR5 LOC143666 LOC101059906 CEND1
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion LRRC56 TALDO1 EPS8L2 PANO1 RASSF7 PTDSS2 IRF7 LMNTD2 LOC171391 SNORA52 PHRF1 DRD4 CHID1 SLC25A22 CRACR2B PNPLA2 PDDC1 SCT RNH1 MIR210HG MIR210 TSPAN4 POLR2L HRAS PIDD1 CD151 TMEM80 RPLP2 DEAF1 CDHR5 LOC143666 LOC101059906 CEND1
esv3625084 Chr.11:856965 - 861642 on Build GRCh38 Loss TSPAN4
nsv552871 Chr.11:766479 - 870446 on Build GRCh38 Loss PNPLA2 PANO1 PDDC1 LOC171391 SNORA52 TSPAN4 POLR2L PIDD1 CD151 CHID1 RPLP2 SLC25A22 CEND1 CRACR2B
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss MUC2 LRRC56 TALDO1 AP2A2 EPS8L2 PANO1 RASSF7 PTDSS2 IRF7 LMNTD2 LOC171391 PKP3 SNORA52 ANO9 PHRF1 B4GALNT4 LOC101927503 SIGIRR MUC5B DRD4 MUC6 CHID1 SLC25A22 CRACR2B PNPLA2 PDDC1 SCT MUC5AC RNH1 MIR210HG MIR210 TSPAN4 POLR2L HRAS PIDD1 CD151 TOLLIP TMEM80 RPLP2 DEAF1 CDHR5 LOC143666 MIR6744 LOC101059906 CEND1
dgv175e214 Chr.11:851409 - 1043855 on Build GRCh38 Gain AP2A2 MUC6 CHID1 TSPAN4
nsv832044 Chr.11:809019 - 938308 on Build GRCh38 Loss POLR2L PIDD1 PNPLA2 AP2A2 CD151 CHID1 RPLP2 SNORA52 TSPAN4 CRACR2B
nsv1040044 Chr.11:776335 - 900929 on Build GRCh38 Gain+Loss PNPLA2 PANO1 PDDC1 LOC171391 SNORA52 TSPAN4 POLR2L PIDD1 CD151 CHID1 RPLP2 SLC25A22 CEND1 CRACR2B
nsv1048774 Chr.11:816471 - 900929 on Build GRCh38 Gain POLR2L PNPLA2 CD151 CHID1 TSPAN4 CRACR2B
nsv951272 Chr.11:751201 - 911500 on Build GRCh38 Deletion TALDO1 PNPLA2 PANO1 PDDC1 LOC171391 SNORA52 TSPAN4 POLR2L PIDD1 CD151 CHID1 RPLP2 SLC25A22 CEND1 CRACR2B

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More Information


Additional Information:

For this assay, SNP(s) [rs114681244] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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