Hs03794756_cn

• Gene Symbol: LRRC56
• Assay Reference Genome Location: Chr.11:544379 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	NM_198075.3			NP_932341.1
	XM_005252775.2			XP_005252832.1
	XM_005252776.2			XP_005252833.1
	XM_006718132.2			XP_006718195.1
	XM_006718133.2			XP_006718196.1
	XM_011519875.2			XP_011518177.1
	XM_011519876.1			XP_011518178.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1
	AK024495.1			BAB15785.1
	BC016439.1
	BC035937.1			AAH35937.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	PHRF1 IRF7 LOC143666 MIR210HG HRAS RASSF7 LRRC56 LOC101059906 CDHR5 MIR210 LMNTD2
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	PHRF1 IRF7 B4GALNT4 RNH1 IFITM1 PKP3 CDHR5 MIR210 IFITM5 SIGIRR LOC143666 MIR210HG HRAS IFITM3 IFITM2 ANO9 RASSF7 LRRC56 PGGHG PTDSS2 LOC101059906 LMNTD2
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	PHRF1 IRF7 LOC143666 MIR210HG HRAS SCT RASSF7 LRRC56 LOC101059906 CDHR5 MIR210 LMNTD2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	SLC25A22 TSPAN4 LOC171391 LOC101927503 MIR6744 RNH1 TALDO1 EPS8L2 CDHR5 MIR210HG HRAS SCT PIDD1 ANO9 PDDC1 RASSF7 LRRC56 AP2A2 DEAF1 SNORA52 LMNTD2 PHRF1 IRF7 B4GALNT4 CD151 RPLP2 PKP3 PNPLA2 MIR210 TOLLIP CHID1 MUC5B PANO1 TMEM80 SIGIRR LOC143666 DRD4 MUC2 CRACR2B MUC5AC CEND1 PTDSS2 LOC101059906 POLR2L MUC6
esv3625069	Chr.11:543810 - 548664 on Build GRCh38	Loss	LRRC56
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	SLC25A22 TSPAN4 LOC171391 LOC101927503 MIR6744 RNH1 TALDO1 EPS8L2 CDHR5 MIR210HG HRAS SCT PIDD1 ANO9 PDDC1 RASSF7 LRRC56 AP2A2 DEAF1 SNORA52 LMNTD2 PHRF1 IRF7 CD151 RPLP2 PNPLA2 MIR210 TOLLIP CHID1 MUC5B PANO1 TMEM80 SIGIRR LOC143666 DRD4 TOLLIP-AS1 MUC2 CRACR2B MUC5AC CEND1 PTDSS2 LOC101059906 POLR2L MUC6
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	PHRF1 IRF7 CDHR5 MIR210 LOC143666 MIR210HG DRD4 HRAS SCT RASSF7 LRRC56 DEAF1 LMNTD2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	SLC25A22 TSPAN4 LOC171391 RNH1 TALDO1 EPS8L2 CDHR5 MIR210HG HRAS SCT PIDD1 ANO9 PDDC1 RASSF7 LRRC56 AP2A2 DEAF1 SNORA52 LMNTD2 PHRF1 IRF7 B4GALNT4 CD151 RPLP2 PKP3 PNPLA2 MIR210 CHID1 PANO1 TMEM80 SIGIRR LOC143666 DRD4 CRACR2B CEND1 PTDSS2 LOC101059906 POLR2L
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	PHRF1 IRF7 RNH1 CDHR5 MIR210 LOC143666 MIR210HG DRD4 HRAS SCT RASSF7 LRRC56 DEAF1 PTDSS2 LOC101059906 LMNTD2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	SLC25A22 TSPAN4 LOC171391 RNH1 TALDO1 EPS8L2 CDHR5 MIR210HG HRAS SCT PIDD1 PDDC1 RASSF7 LRRC56 DEAF1 SNORA52 LMNTD2 PHRF1 IRF7 CD151 RPLP2 PNPLA2 MIR210 CHID1 PANO1 TMEM80 LOC143666 DRD4 CRACR2B CEND1 PTDSS2 LOC101059906 POLR2L
nsv552855	Chr.11:532923 - 545087 on Build GRCh38	Loss	HRAS LRRC56

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation