Hs03794756_cn

• Gene Symbol: LRRC56
• Assay Reference Genome Location: Chr.11:544379 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	NM_198075.3			NP_932341.1
	XM_005252775.2			XP_005252832.1
	XM_005252776.2			XP_005252833.1
	XM_006718132.2			XP_006718195.1
	XM_006718133.2			XP_006718196.1
	XM_011519875.2			XP_011518177.1
	XM_011519876.1			XP_011518178.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1
	AK024495.1			BAB15785.1
	BC016439.1
	BC035937.1			AAH35937.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv467634	Chr.11:511805 - 619789 on Build GRCh38	Loss	LOC101059906 MIR210 HRAS MIR210HG LRRC56 RASSF7 PHRF1 LOC143666 LMNTD2 CDHR5 IRF7
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	LOC101059906 SIGIRR IFITM3 MIR210HG LRRC56 ANO9 PKP3 LOC143666 B4GALNT4 LMNTD2 MIR210 RNH1 HRAS IFITM2 RASSF7 PTDSS2 PHRF1 PGGHG IFITM5 CDHR5 IRF7 IFITM1
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LOC101059906 MIR210 HRAS MIR210HG LRRC56 RASSF7 SCT PHRF1 LOC143666 LMNTD2 CDHR5 IRF7
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LOC101059906 EPS8L2 MUC2 SNORA52 LRRC56 ANO9 PKP3 LOC143666 PIDD1 MUC5AC MIR210 SLC25A22 CEND1 MIR6744 PTDSS2 POLR2L PNPLA2 CDHR5 DEAF1 SIGIRR PDDC1 MIR210HG LOC171391 RPLP2 CD151 PANO1 B4GALNT4 LMNTD2 MUC6 AP2A2 LOC101927503 TOLLIP TALDO1 RNH1 DRD4 TSPAN4 HRAS CHID1 TMEM80 RASSF7 SCT PHRF1 MUC5B CRACR2B IRF7
esv3625069	Chr.11:543810 - 548664 on Build GRCh38	Loss	LRRC56
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LOC101059906 EPS8L2 MUC2 SNORA52 LRRC56 ANO9 LOC143666 PIDD1 MUC5AC MIR210 SLC25A22 CEND1 MIR6744 PTDSS2 POLR2L PNPLA2 CDHR5 DEAF1 SIGIRR PDDC1 MIR210HG LOC171391 RPLP2 CD151 PANO1 LMNTD2 TOLLIP-AS1 MUC6 AP2A2 LOC101927503 TOLLIP TALDO1 RNH1 DRD4 TSPAN4 HRAS CHID1 TMEM80 RASSF7 SCT PHRF1 MUC5B CRACR2B IRF7
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	DEAF1 MIR210HG LRRC56 LOC143666 LMNTD2 MIR210 DRD4 HRAS RASSF7 SCT PHRF1 CDHR5 IRF7
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LOC101059906 DEAF1 MIR210HG LRRC56 LOC143666 LMNTD2 MIR210 RNH1 DRD4 HRAS RASSF7 SCT PTDSS2 PHRF1 CDHR5 IRF7
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LOC101059906 EPS8L2 SNORA52 LRRC56 ANO9 PKP3 LOC143666 PIDD1 MIR210 SLC25A22 CEND1 PTDSS2 POLR2L PNPLA2 CDHR5 DEAF1 SIGIRR PDDC1 MIR210HG LOC171391 RPLP2 CD151 PANO1 B4GALNT4 LMNTD2 AP2A2 TALDO1 RNH1 DRD4 TSPAN4 HRAS CHID1 TMEM80 RASSF7 SCT PHRF1 CRACR2B IRF7
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LOC101059906 EPS8L2 SNORA52 LRRC56 LOC143666 PIDD1 MIR210 SLC25A22 CEND1 PTDSS2 POLR2L PNPLA2 CDHR5 DEAF1 PDDC1 MIR210HG LOC171391 RPLP2 CD151 PANO1 LMNTD2 TALDO1 RNH1 DRD4 TSPAN4 HRAS CHID1 TMEM80 RASSF7 SCT PHRF1 CRACR2B IRF7
nsv552855	Chr.11:532923 - 545087 on Build GRCh38	Loss	HRAS LRRC56

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation