Hs03795156_cn

• Gene Symbol: LOC101059906
• Assay Reference Genome Location: Chr.11:531439 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 101059906
• Gene Name: collagen alpha-2(IV) chain-like
• Gene Aliases: -
• Location: Chr.11:528484-532263 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101059906	XM_003959933.4	4	1333	XP_003959982.2

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	XM_011519875.2			XP_011518177.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv467634	Chr.11:511805 - 619789 on Build GRCh38	Loss	MIR210 IRF7 MIR210HG LRRC56 HRAS LMNTD2 LOC143666 PHRF1 CDHR5 LOC101059906 RASSF7
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	SIGIRR RNH1 PTDSS2 IRF7 MIR210HG IFITM5 IFITM3 ANO9 LMNTD2 IFITM2 IFITM1 LOC101059906 RASSF7 B4GALNT4 MIR210 LRRC56 HRAS PGGHG PKP3 LOC143666 PHRF1 CDHR5
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	MIR210 IRF7 MIR210HG LRRC56 HRAS LMNTD2 LOC143666 PHRF1 SCT CDHR5 LOC101059906 RASSF7
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LOC171391 EPS8L2 CRACR2B IRF7 PIDD1 POLR2L CHID1 LOC101059906 DEAF1 PNPLA2 MIR210 TALDO1 LRRC56 PANO1 LOC143666 MUC2 SLC25A22 PHRF1 CDHR5 RPLP2 SIGIRR RNH1 PTDSS2 MUC6 CD151 MIR210HG MIR6744 TSPAN4 ANO9 LMNTD2 MUC5AC LOC101927503 RASSF7 MUC5B B4GALNT4 TOLLIP PDDC1 TMEM80 CEND1 HRAS AP2A2 PKP3 SCT DRD4 SNORA52
dgv542e59	Chr.11:530452 - 531450 on Build GRCh38	Duplication	LRRC56 LOC101059906
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LOC171391 EPS8L2 CRACR2B IRF7 TOLLIP-AS1 PIDD1 POLR2L CHID1 LOC101059906 DEAF1 PNPLA2 MIR210 TALDO1 LRRC56 PANO1 LOC143666 MUC2 SLC25A22 PHRF1 CDHR5 RPLP2 SIGIRR RNH1 PTDSS2 MUC6 CD151 MIR210HG MIR6744 TSPAN4 ANO9 LMNTD2 MUC5AC LOC101927503 RASSF7 MUC5B TOLLIP PDDC1 TMEM80 CEND1 HRAS AP2A2 SCT DRD4 SNORA52
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	RNH1 PTDSS2 IRF7 MIR210HG LMNTD2 LOC101059906 RASSF7 DEAF1 MIR210 LRRC56 HRAS LOC143666 PHRF1 SCT CDHR5 DRD4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LOC171391 EPS8L2 CRACR2B IRF7 PIDD1 POLR2L CHID1 LOC101059906 DEAF1 PNPLA2 MIR210 TALDO1 LRRC56 PANO1 LOC143666 SLC25A22 PHRF1 CDHR5 RPLP2 SIGIRR RNH1 PTDSS2 CD151 MIR210HG TSPAN4 ANO9 LMNTD2 RASSF7 B4GALNT4 PDDC1 TMEM80 CEND1 HRAS AP2A2 PKP3 SCT DRD4 SNORA52
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LOC171391 EPS8L2 CRACR2B IRF7 PIDD1 POLR2L CHID1 LOC101059906 DEAF1 PNPLA2 MIR210 TALDO1 LRRC56 PANO1 LOC143666 SLC25A22 PHRF1 CDHR5 RPLP2 RNH1 PTDSS2 CD151 MIR210HG TSPAN4 LMNTD2 RASSF7 PDDC1 TMEM80 CEND1 HRAS SCT DRD4 SNORA52

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix structural protein