Hs03795156_cn

• Gene Symbol: LOC101059906
• Assay Reference Genome Location: Chr.11:531439 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 101059906
• Gene Name: collagen alpha-2(IV) chain-like
• Gene Aliases: -
• Location: Chr.11:528484-532263 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101059906	XM_003959933.4	4	1333	XP_003959982.2

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	XM_011519875.2			XP_011518177.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	HRAS RASSF7 CDHR5 LOC101059906 PHRF1 LOC143666 MIR210HG IRF7 LRRC56 LMNTD2 MIR210
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	RASSF7 LOC101059906 ANO9 LOC143666 IRF7 LRRC56 IFITM2 LMNTD2 IFITM5 MIR210 PTDSS2 HRAS IFITM3 PKP3 B4GALNT4 CDHR5 PGGHG SIGIRR IFITM1 RNH1 PHRF1 MIR210HG
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	HRAS RASSF7 CDHR5 LOC101059906 SCT PHRF1 LOC143666 MIR210HG IRF7 LRRC56 LMNTD2 MIR210
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	RASSF7 LOC101927503 CD151 MUC6 PANO1 ANO9 PIDD1 LOC143666 POLR2L LRRC56 PDDC1 MIR210 TOLLIP HRAS PKP3 SLC25A22 MIR6744 TSPAN4 CHID1 MUC5B MIR210HG AP2A2 RPLP2 TMEM80 LOC171391 PNPLA2 SNORA52 LOC101059906 SCT IRF7 CEND1 CRACR2B TALDO1 DEAF1 LMNTD2 MUC5AC EPS8L2 PTDSS2 DRD4 MUC2 B4GALNT4 CDHR5 SIGIRR RNH1 PHRF1
dgv542e59	Chr.11:530452 - 531450 on Build GRCh38	Duplication	LOC101059906 LRRC56
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	RASSF7 LOC101927503 CD151 MUC6 PANO1 ANO9 PIDD1 TOLLIP-AS1 LOC143666 POLR2L LRRC56 PDDC1 MIR210 TOLLIP HRAS SLC25A22 MIR6744 TSPAN4 CHID1 MUC5B MIR210HG AP2A2 RPLP2 TMEM80 LOC171391 PNPLA2 SNORA52 LOC101059906 SCT IRF7 CEND1 CRACR2B TALDO1 DEAF1 LMNTD2 MUC5AC EPS8L2 PTDSS2 DRD4 MUC2 CDHR5 SIGIRR RNH1 PHRF1
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	RASSF7 CD151 PANO1 ANO9 PIDD1 LOC143666 POLR2L LRRC56 PDDC1 MIR210 HRAS PKP3 SLC25A22 TSPAN4 CHID1 MIR210HG AP2A2 RPLP2 TMEM80 LOC171391 PNPLA2 SNORA52 LOC101059906 SCT IRF7 CEND1 CRACR2B TALDO1 DEAF1 LMNTD2 EPS8L2 PTDSS2 DRD4 B4GALNT4 CDHR5 SIGIRR RNH1 PHRF1
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	RASSF7 LOC101059906 SCT LOC143666 IRF7 LRRC56 DEAF1 LMNTD2 MIR210 PTDSS2 HRAS DRD4 CDHR5 RNH1 PHRF1 MIR210HG
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	RASSF7 CD151 PANO1 PIDD1 LOC143666 POLR2L LRRC56 PDDC1 MIR210 HRAS SLC25A22 TSPAN4 CHID1 MIR210HG RPLP2 TMEM80 LOC171391 PNPLA2 SNORA52 LOC101059906 SCT IRF7 CEND1 CRACR2B TALDO1 DEAF1 LMNTD2 EPS8L2 PTDSS2 DRD4 CDHR5 RNH1 PHRF1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix structural protein