accessibility menu, dialog, popup

UserName
Viewing profile as user:

Please enter the information below and press OK to send your cart to Core Services for purchase.

    

System Message

OKCancel
LOADING ...
See other CHID1 CNV Assays ›
Gene Symbol
CHID1
Assay Reference Genome
Location

Chr.11:873947 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03797207_cn
Size
Availability Made To Order
Catalog # 4400291
Price
Your Price
Online offer:
Check your price ›

Assay Details

Target Gene Details

Entrez Gene ID:

 66005

Gene Name:

 chitinase domain containing 1

Gene Aliases:

 GL008, SI-CLP, SICLP

Location:

 Chr.11:867859-915058 on Build GRCh38

Assay Gene Location:

 Within Intron 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CHID1 NM_001142674.1 NP_001136146.1
NM_001142675.1 NP_001136147.1
NM_001142676.1 NP_001136148.1
NM_001142677.1 NP_001136149.1
NM_023947.3 NP_076436.3
XM_005253072.2 XP_005253129.1
XM_005253073.4 XP_005253130.1
XM_006718282.2 XP_006718345.1
XM_011520299.1 XP_011518601.1
XM_011520300.1 XP_011518602.1
XM_017018166.1 XP_016873655.1
AF212229.1 AAK14915.1
AK027711.1 BAB55316.1
AK075413.1 BAC11603.1
AK124697.1
AK225025.1
AK225398.1
AK297743.1
AK301245.1
AY037151.1 AAK67632.1
BC000001.2 AAH00001.1
BC013642.1 AAH13642.1
BC095409.1 AAH95409.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3625086 Chr.11:860117 - 882352 on Build GRCh38 Loss TSPAN4 CHID1
dgv1013n100 Chr.11:772982 - 933569 on Build GRCh38 Gain SLC25A22 PANO1 CEND1 PDDC1 SNORA52 CRACR2B RPLP2 TSPAN4 AP2A2 CD151 POLR2L LOC171391 PNPLA2 PIDD1 CHID1
nsv552887 Chr.11:841284 - 876755 on Build GRCh38 Loss TSPAN4 POLR2L CHID1
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss SLC25A22 RNH1 PANO1 DEAF1 TMEM80 CEND1 SIGIRR ANO9 MUC2 CDHR5 LMNTD2 RASSF7 RPLP2 PTDSS2 MIR210 MIR210HG DRD4 LRRC56 TALDO1 LOC171391 PNPLA2 MUC6 LOC101059906 CHID1 SCT TOLLIP IRF7 PDDC1 TOLLIP-AS1 SNORA52 EPS8L2 CRACR2B LOC101927503 HRAS MUC5AC LOC143666 TSPAN4 AP2A2 CD151 PHRF1 POLR2L MUC5B PIDD1 MIR6744
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion SLC25A22 RNH1 PANO1 DEAF1 TMEM80 CEND1 SIGIRR ANO9 CDHR5 LMNTD2 RASSF7 RPLP2 PTDSS2 MIR210 MIR210HG DRD4 LRRC56 TALDO1 LOC171391 PNPLA2 LOC101059906 CHID1 PKP3 SCT B4GALNT4 IRF7 PDDC1 SNORA52 EPS8L2 CRACR2B HRAS LOC143666 TSPAN4 AP2A2 CD151 PHRF1 POLR2L PIDD1
esv2743878 Chr.11:864732 - 1489652 on Build GRCh38 Deletion TOLLIP MOB2 TOLLIP-AS1 MUC2 BRSK2 LOC101927503 MUC5AC TSPAN4 AP2A2 MUC6 MUC5B MIR6744 CHID1
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion SLC25A22 RNH1 PANO1 DEAF1 TMEM80 CEND1 CDHR5 LMNTD2 RASSF7 RPLP2 PTDSS2 MIR210 MIR210HG DRD4 LRRC56 TALDO1 LOC171391 PNPLA2 LOC101059906 CHID1 SCT IRF7 PDDC1 SNORA52 EPS8L2 CRACR2B HRAS LOC143666 TSPAN4 CD151 PHRF1 POLR2L PIDD1
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss SLC25A22 RNH1 PANO1 DEAF1 TMEM80 CEND1 SIGIRR ANO9 MUC2 CDHR5 LMNTD2 RASSF7 RPLP2 PTDSS2 MIR210 MIR210HG DRD4 LRRC56 TALDO1 LOC171391 PNPLA2 MUC6 LOC101059906 CHID1 PKP3 SCT B4GALNT4 TOLLIP IRF7 PDDC1 SNORA52 EPS8L2 CRACR2B LOC101927503 HRAS MUC5AC LOC143666 TSPAN4 AP2A2 CD151 PHRF1 POLR2L MUC5B PIDD1 MIR6744
dgv175e214 Chr.11:851409 - 1043855 on Build GRCh38 Gain TSPAN4 AP2A2 MUC6 CHID1
esv2669189 Chr.11:864834 - 1489637 on Build GRCh38 Deletion TOLLIP MOB2 TOLLIP-AS1 MUC2 BRSK2 LOC101927503 MUC5AC TSPAN4 AP2A2 MUC6 MUC5B MIR6744 CHID1
nsv832044 Chr.11:809019 - 938308 on Build GRCh38 Loss RPLP2 TSPAN4 AP2A2 CD151 POLR2L PNPLA2 PIDD1 SNORA52 CHID1 CRACR2B
nsv1040044 Chr.11:776335 - 900929 on Build GRCh38 Gain+Loss SLC25A22 PANO1 CEND1 PDDC1 SNORA52 CRACR2B RPLP2 TSPAN4 CD151 POLR2L LOC171391 PNPLA2 PIDD1 CHID1
nsv1048774 Chr.11:816471 - 900929 on Build GRCh38 Gain TSPAN4 CD151 POLR2L PNPLA2 CHID1 CRACR2B
nsv951272 Chr.11:751201 - 911500 on Build GRCh38 Deletion SLC25A22 PANO1 CEND1 PDDC1 SNORA52 CRACR2B RPLP2 TSPAN4 TALDO1 CD151 POLR2L LOC171391 PNPLA2 PIDD1 CHID1

Back To Top

More Information


Additional Information:

For this assay, SNP(s) [rs145605174] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


Back To Top

Related Products