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See other CHID1 CNV Assays ›
Gene Symbol
CHID1
Assay Reference Genome
Location

Chr.11:873947 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03797207_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 66005

Gene Name:

 chitinase domain containing 1

Gene Aliases:

 GL008, SI-CLP, SICLP

Location:

 Chr.11:867859-915058 on Build GRCh38

Assay Gene Location:

 Within Intron 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CHID1 NM_001142674.1 NP_001136146.1
NM_001142675.1 NP_001136147.1
NM_001142676.1 NP_001136148.1
NM_001142677.1 NP_001136149.1
NM_023947.3 NP_076436.3
XM_005253072.2 XP_005253129.1
XM_005253073.4 XP_005253130.1
XM_006718282.2 XP_006718345.1
XM_011520299.1 XP_011518601.1
XM_011520300.1 XP_011518602.1
XM_017018166.1 XP_016873655.1
AF212229.1 AAK14915.1
AK027711.1 BAB55316.1
AK075413.1 BAC11603.1
AK124697.1
AK225025.1
AK225398.1
AK297743.1
AK301245.1
AY037151.1 AAK67632.1
BC000001.2 AAH00001.1
BC013642.1 AAH13642.1
BC095409.1 AAH95409.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3625087 Chr.11:860117 - 882352 on Build GRCh38 Gain TSPAN4 CHID1
dgv1013n100 Chr.11:772982 - 933569 on Build GRCh38 Gain CEND1 PANO1 RPLP2 TSPAN4 LOC171391 SNORA52 PIDD1 CRACR2B PDDC1 PNPLA2 POLR2L AP2A2 CD151 SLC25A22 CHID1
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss CEND1 MUC5B PANO1 LOC143666 DEAF1 LOC171391 SIGIRR PIDD1 CRACR2B LMNTD2 RNH1 PNPLA2 POLR2L EPS8L2 TALDO1 TOLLIP-AS1 LOC101927503 MIR210 MIR210HG RPLP2 TSPAN4 PTDSS2 LRRC56 SNORA52 DRD4 MUC2 PHRF1 PDDC1 IRF7 MIR6744 TOLLIP AP2A2 CD151 TMEM80 SLC25A22 MUC6 RASSF7 CDHR5 ANO9 HRAS MUC5AC LOC101059906 SCT CHID1
nsv552887 Chr.11:841284 - 876755 on Build GRCh38 Loss POLR2L TSPAN4 CHID1
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion CEND1 PANO1 LOC143666 DEAF1 LOC171391 SIGIRR PIDD1 CRACR2B LMNTD2 RNH1 B4GALNT4 PNPLA2 PKP3 POLR2L EPS8L2 TALDO1 MIR210 MIR210HG RPLP2 TSPAN4 PTDSS2 LRRC56 SNORA52 DRD4 PHRF1 PDDC1 IRF7 AP2A2 CD151 TMEM80 SLC25A22 RASSF7 CDHR5 ANO9 HRAS LOC101059906 SCT CHID1
esv2743878 Chr.11:864732 - 1489652 on Build GRCh38 Deletion MUC5B BRSK2 TSPAN4 MUC2 MIR6744 TOLLIP AP2A2 MOB2 MUC6 TOLLIP-AS1 MUC5AC CHID1 LOC101927503
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion CEND1 PANO1 LOC143666 DEAF1 LOC171391 PIDD1 CRACR2B LMNTD2 RNH1 PNPLA2 POLR2L EPS8L2 TALDO1 MIR210 MIR210HG RPLP2 TSPAN4 PTDSS2 LRRC56 SNORA52 DRD4 PHRF1 PDDC1 IRF7 CD151 TMEM80 SLC25A22 RASSF7 CDHR5 HRAS LOC101059906 SCT CHID1
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss CEND1 MUC5B PANO1 LOC143666 DEAF1 LOC171391 SIGIRR PIDD1 CRACR2B LMNTD2 RNH1 B4GALNT4 PNPLA2 PKP3 POLR2L EPS8L2 TALDO1 LOC101927503 MIR210 MIR210HG RPLP2 TSPAN4 PTDSS2 LRRC56 SNORA52 DRD4 MUC2 PHRF1 PDDC1 IRF7 MIR6744 TOLLIP AP2A2 CD151 TMEM80 SLC25A22 MUC6 RASSF7 CDHR5 ANO9 HRAS MUC5AC LOC101059906 SCT CHID1
dgv175e214 Chr.11:851409 - 1043855 on Build GRCh38 Gain AP2A2 MUC6 TSPAN4 CHID1
esv2669189 Chr.11:864834 - 1489637 on Build GRCh38 Deletion MUC5B BRSK2 TSPAN4 MUC2 MIR6744 TOLLIP AP2A2 MOB2 MUC6 TOLLIP-AS1 MUC5AC CHID1 LOC101927503
nsv832044 Chr.11:809019 - 938308 on Build GRCh38 Loss POLR2L AP2A2 CD151 RPLP2 TSPAN4 SNORA52 PIDD1 CRACR2B PNPLA2 CHID1
nsv1040044 Chr.11:776335 - 900929 on Build GRCh38 Gain+Loss CEND1 PANO1 RPLP2 TSPAN4 LOC171391 SNORA52 PIDD1 CRACR2B PDDC1 PNPLA2 POLR2L CD151 SLC25A22 CHID1
nsv1048774 Chr.11:816471 - 900929 on Build GRCh38 Gain POLR2L CD151 TSPAN4 CRACR2B PNPLA2 CHID1
nsv951272 Chr.11:751201 - 911500 on Build GRCh38 Deletion CEND1 PANO1 RPLP2 TSPAN4 LOC171391 SNORA52 PIDD1 CRACR2B PDDC1 PNPLA2 POLR2L CD151 SLC25A22 TALDO1 CHID1

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More Information


Additional Information:

For this assay, SNP(s) [rs145605174] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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