Hs03799284_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:863326 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK054788.1	1	55
	AK095212.1	2	810
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625087	Chr.11:860117 - 882352 on Build GRCh38	Gain	CHID1 TSPAN4
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CHID1 POLR2L PDDC1 SNORA52 TSPAN4 PIDD1 CEND1 RPLP2 SLC25A22 CD151 PANO1 LOC171391 PNPLA2 CRACR2B AP2A2
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CHID1 EPS8L2 POLR2L SNORA52 DRD4 TSPAN4 PIDD1 MIR210HG SCT HRAS SLC25A22 PANO1 LOC171391 TALDO1 TOLLIP-AS1 AP2A2 MUC2 MUC5AC DEAF1 LMNTD2 PDDC1 TOLLIP LOC101059906 RNH1 MUC5B SIGIRR RASSF7 CEND1 RPLP2 CD151 CDHR5 LOC143666 ANO9 MIR210 PTDSS2 IRF7 PNPLA2 CRACR2B PHRF1 MUC6 TMEM80 LOC101927503 LRRC56 MIR6744
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CHID1 EPS8L2 POLR2L SNORA52 DRD4 TSPAN4 PIDD1 MIR210HG PKP3 SCT HRAS SLC25A22 B4GALNT4 PANO1 LOC171391 TALDO1 AP2A2 DEAF1 LMNTD2 PDDC1 LOC101059906 RNH1 SIGIRR RASSF7 CEND1 RPLP2 CD151 CDHR5 LOC143666 ANO9 MIR210 PTDSS2 IRF7 PNPLA2 CRACR2B PHRF1 TMEM80 LRRC56
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CHID1 EPS8L2 POLR2L SNORA52 DRD4 TSPAN4 PIDD1 MIR210HG SCT HRAS SLC25A22 PANO1 LOC171391 TALDO1 DEAF1 LMNTD2 PDDC1 LOC101059906 RNH1 RASSF7 CEND1 RPLP2 CD151 CDHR5 LOC143666 MIR210 PTDSS2 IRF7 PNPLA2 CRACR2B PHRF1 TMEM80 LRRC56
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CHID1 POLR2L PDDC1 SNORA52 TSPAN4 PIDD1 CEND1 RPLP2 SLC25A22 CD151 PANO1 LOC171391 PNPLA2 CRACR2B
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CHID1 EPS8L2 POLR2L SNORA52 DRD4 TSPAN4 PIDD1 MIR210HG PKP3 SCT HRAS SLC25A22 B4GALNT4 PANO1 LOC171391 TALDO1 AP2A2 MUC2 MUC5AC DEAF1 LMNTD2 PDDC1 TOLLIP LOC101059906 RNH1 MUC5B SIGIRR RASSF7 CEND1 RPLP2 CD151 CDHR5 LOC143666 ANO9 MIR210 PTDSS2 IRF7 PNPLA2 CRACR2B PHRF1 MUC6 TMEM80 LOC101927503 LRRC56 MIR6744
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	CHID1 TSPAN4 AP2A2 MUC6
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CHID1 POLR2L SNORA52 TSPAN4 PIDD1 PNPLA2 CRACR2B AP2A2 RPLP2 CD151
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CHID1 POLR2L PDDC1 SNORA52 TSPAN4 PIDD1 CEND1 RPLP2 SLC25A22 CD151 PANO1 LOC171391 PNPLA2 CRACR2B
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CHID1 POLR2L TSPAN4 PNPLA2 CRACR2B CD151
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CHID1 POLR2L PDDC1 SNORA52 TSPAN4 PIDD1 CEND1 RPLP2 SLC25A22 CD151 PANO1 LOC171391 TALDO1 PNPLA2 CRACR2B

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding