Hs03799284_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:863326 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK054788.1	1	55
	AK095212.1	2	810
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625086	Chr.11:860117 - 882352 on Build GRCh38	Loss	TSPAN4 CHID1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CEND1 AP2A2 SLC25A22 CRACR2B RPLP2 PIDD1 POLR2L PANO1 TSPAN4 PDDC1 CD151 CHID1 SNORA52 LOC171391 PNPLA2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 CHID1 POLR2L
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LRRC56 AP2A2 TMEM80 RASSF7 IRF7 MUC2 PIDD1 MUC6 PANO1 MIR210 TOLLIP HRAS EPS8L2 TSPAN4 CHID1 DRD4 MUC5B SNORA52 PTDSS2 MUC5AC CEND1 PHRF1 SLC25A22 CRACR2B LOC101927503 LOC101059906 RPLP2 POLR2L MIR6744 SCT LOC143666 RNH1 ANO9 TALDO1 PDDC1 CD151 TOLLIP-AS1 DEAF1 MIR210HG LMNTD2 LOC171391 CDHR5 SIGIRR PNPLA2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LRRC56 AP2A2 TMEM80 RASSF7 IRF7 PIDD1 PANO1 MIR210 HRAS EPS8L2 TSPAN4 CHID1 DRD4 SNORA52 PTDSS2 CEND1 PHRF1 SLC25A22 CRACR2B LOC101059906 B4GALNT4 RPLP2 POLR2L SCT LOC143666 RNH1 ANO9 TALDO1 PDDC1 CD151 PKP3 DEAF1 MIR210HG LMNTD2 LOC171391 CDHR5 SIGIRR PNPLA2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LRRC56 TMEM80 RASSF7 IRF7 PIDD1 PANO1 MIR210 HRAS EPS8L2 TSPAN4 CHID1 DRD4 SNORA52 PTDSS2 CEND1 PHRF1 SLC25A22 CRACR2B LOC101059906 RPLP2 POLR2L SCT LOC143666 RNH1 TALDO1 PDDC1 CD151 DEAF1 MIR210HG LMNTD2 LOC171391 CDHR5 PNPLA2
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CEND1 SLC25A22 CRACR2B RPLP2 PIDD1 POLR2L PANO1 TSPAN4 PDDC1 CD151 CHID1 SNORA52 LOC171391 PNPLA2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LRRC56 AP2A2 TMEM80 RASSF7 IRF7 MUC2 PIDD1 MUC6 PANO1 MIR210 TOLLIP HRAS EPS8L2 TSPAN4 CHID1 DRD4 MUC5B SNORA52 PTDSS2 MUC5AC CEND1 PHRF1 SLC25A22 CRACR2B LOC101927503 LOC101059906 B4GALNT4 RPLP2 POLR2L MIR6744 SCT LOC143666 RNH1 ANO9 TALDO1 PDDC1 CD151 PKP3 DEAF1 MIR210HG LMNTD2 LOC171391 CDHR5 SIGIRR PNPLA2
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	AP2A2 TSPAN4 CHID1 MUC6
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	AP2A2 CRACR2B TSPAN4 CD151 RPLP2 CHID1 PIDD1 POLR2L SNORA52 PNPLA2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CEND1 SLC25A22 CRACR2B RPLP2 PIDD1 POLR2L PANO1 TSPAN4 PDDC1 CD151 CHID1 SNORA52 LOC171391 PNPLA2
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CRACR2B TSPAN4 CD151 CHID1 POLR2L PNPLA2
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CEND1 SLC25A22 CRACR2B RPLP2 PIDD1 POLR2L PANO1 TALDO1 TSPAN4 PDDC1 CD151 CHID1 SNORA52 LOC171391 PNPLA2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding