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See other DEAF1 CNV Assays ›
Gene Symbol
DEAF1
Assay Reference Genome
Location

Chr.11:648111 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03799509_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10522

Gene Name:

 DEAF1, transcription factor

Gene Aliases:

 MRD24, NUDR, SPN, ZMYND5

Location:

 Chr.11:644220-695754 on Build GRCh38

Assay Gene Location:

 Within Intron 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DEAF1 NM_001293634.1 NP_001280563.1
NM_021008.3 NP_066288.2
AB209831.1 BAD93068.1
AF007165.1 AAB62704.1
AF049459.1 AAC79676.1
AF049460.1 AAC79677.1
AF068892.1 AAC25714.1
AF068893.1 AAC25715.1
AF068894.1 AAC25716.1
AF068895.1 AAC25717.1
AF068896.1 AAC25718.1
AF068897.1 AAC25719.1
AK289873.1
AK291383.1
BC053322.1 AAH53322.1
FJ985253.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv1523n54 Chr.11:557342 - 656940 on Build GRCh38 Gain PHRF1 MIR210HG DEAF1 MIR210 LOC143666 CDHR5 LMNTD2 SCT RASSF7 DRD4 IRF7
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss CD151 MUC5B PHRF1 MIR210HG LOC101059906 AP2A2 LOC143666 CHID1 LMNTD2 MIR6744 PIDD1 CRACR2B TSPAN4 DEAF1 SIGIRR MIR210 LOC101927503 POLR2L ANO9 LRRC56 TMEM80 MUC5AC PNPLA2 SNORA52 PDDC1 TOLLIP MUC2 PTDSS2 CDHR5 HRAS RPLP2 SCT CEND1 PANO1 DRD4 IRF7 EPS8L2 SLC25A22 LOC171391 MUC6 RASSF7 RNH1 PKP3 TALDO1 B4GALNT4
nsv552861 Chr.11:589246 - 662407 on Build GRCh38 Loss PHRF1 DEAF1 CDHR5 SCT DRD4 IRF7
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss CD151 MUC5B PHRF1 MIR210HG LOC101059906 AP2A2 LOC143666 CHID1 LMNTD2 MIR6744 PIDD1 CRACR2B TSPAN4 DEAF1 SIGIRR MIR210 LOC101927503 POLR2L ANO9 LRRC56 TMEM80 MUC5AC PNPLA2 SNORA52 PDDC1 TOLLIP MUC2 PTDSS2 CDHR5 HRAS RPLP2 SCT CEND1 PANO1 DRD4 IRF7 EPS8L2 SLC25A22 LOC171391 MUC6 RASSF7 TOLLIP-AS1 RNH1 TALDO1
nsv832043 Chr.11:631027 - 758602 on Build GRCh38 Loss EPS8L2 DEAF1 TMEM80 DRD4 TALDO1
esv2762889 Chr.11:606294 - 653614 on Build GRCh38 Loss PHRF1 DEAF1 CDHR5 SCT DRD4 IRF7
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain PHRF1 MIR210HG LOC143666 CDHR5 HRAS LMNTD2 SCT DRD4 IRF7 DEAF1 MIR210 RASSF7 LRRC56
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion CD151 PHRF1 MIR210HG LOC101059906 AP2A2 LOC143666 CHID1 LMNTD2 PIDD1 CRACR2B TSPAN4 DEAF1 SIGIRR MIR210 POLR2L ANO9 LRRC56 TMEM80 PNPLA2 SNORA52 PDDC1 PTDSS2 CDHR5 HRAS RPLP2 SCT CEND1 PANO1 DRD4 IRF7 EPS8L2 SLC25A22 LOC171391 RASSF7 RNH1 PKP3 TALDO1 B4GALNT4
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain PHRF1 MIR210HG LOC101059906 LOC143666 PTDSS2 CDHR5 HRAS LMNTD2 SCT DRD4 IRF7 DEAF1 MIR210 RASSF7 LRRC56 RNH1
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion CD151 PHRF1 MIR210HG LOC101059906 LOC143666 CHID1 LMNTD2 PIDD1 CRACR2B TSPAN4 DEAF1 MIR210 POLR2L LRRC56 TMEM80 PNPLA2 SNORA52 PDDC1 PTDSS2 CDHR5 HRAS RPLP2 SCT CEND1 PANO1 DRD4 IRF7 EPS8L2 SLC25A22 LOC171391 RASSF7 RNH1 TALDO1
dgv1525n54 Chr.11:647869 - 688312 on Build GRCh38 Loss DEAF1
esv2059951 Chr.11:647716 - 648170 on Build GRCh38 Deletion DEAF1

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More Information


Additional Information:

For this assay, SNP(s) [rs115909063] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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