Hs03801055_cn

• Gene Symbol: LOC101059906
• Assay Reference Genome Location: Chr.11:528895 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 101059906
• Gene Name: collagen alpha-2(IV) chain-like
• Gene Aliases: -
• Location: Chr.11:528484-532263 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101059906	XM_003959933.4			XP_003959982.2

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	XM_011519875.2			XP_011518177.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	LOC101059906 HRAS MIR210 LRRC56 IRF7 CDHR5 PHRF1 RASSF7 LOC143666 MIR210HG LMNTD2
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	IFITM2 LOC101059906 RNH1 PTDSS2 IFITM5 LMNTD2 IFITM1 SIGIRR HRAS MIR210 PGGHG IFITM3 B4GALNT4 ANO9 LRRC56 IRF7 CDHR5 PHRF1 RASSF7 PKP3 LOC143666 MIR210HG
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LOC101059906 SCT HRAS MIR210 LRRC56 IRF7 CDHR5 PHRF1 RASSF7 LOC143666 MIR210HG LMNTD2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PIDD1 MIR6744 PANO1 PTDSS2 LOC101927503 PNPLA2 SIGIRR LOC171391 MUC5AC CRACR2B TMEM80 IRF7 PHRF1 CD151 LOC143666 MIR210HG MUC2 LOC101059906 POLR2L CHID1 RPLP2 CEND1 RNH1 DRD4 LMNTD2 AP2A2 TSPAN4 MUC6 SCT HRAS MIR210 TOLLIP SNORA52 B4GALNT4 ANO9 LRRC56 SLC25A22 MUC5B CDHR5 RASSF7 TALDO1 DEAF1 PKP3 PDDC1 EPS8L2
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	PIDD1 MIR6744 PANO1 PTDSS2 LOC101927503 PNPLA2 SIGIRR LOC171391 MUC5AC CRACR2B TMEM80 TOLLIP-AS1 IRF7 PHRF1 CD151 LOC143666 MIR210HG MUC2 LOC101059906 POLR2L CHID1 RPLP2 CEND1 RNH1 DRD4 LMNTD2 AP2A2 TSPAN4 MUC6 SCT HRAS MIR210 TOLLIP SNORA52 ANO9 LRRC56 SLC25A22 MUC5B CDHR5 RASSF7 TALDO1 DEAF1 PDDC1 EPS8L2
esv3366265	Chr.11:528252 - 531250 on Build GRCh38	Duplication	LOC101059906 LRRC56
esv33673	Chr.11:528525 - 530251 on Build GRCh38	Gain	LOC101059906 LRRC56
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PIDD1 PANO1 PTDSS2 PNPLA2 SIGIRR LOC171391 CRACR2B TMEM80 IRF7 PHRF1 CD151 LOC143666 MIR210HG LOC101059906 POLR2L CHID1 RPLP2 CEND1 RNH1 DRD4 LMNTD2 AP2A2 TSPAN4 SCT HRAS MIR210 SNORA52 B4GALNT4 ANO9 LRRC56 SLC25A22 CDHR5 RASSF7 TALDO1 DEAF1 PKP3 PDDC1 EPS8L2
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LOC101059906 RNH1 DRD4 PTDSS2 LMNTD2 SCT HRAS MIR210 LRRC56 IRF7 CDHR5 PHRF1 RASSF7 DEAF1 LOC143666 MIR210HG
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PIDD1 PANO1 PTDSS2 PNPLA2 LOC171391 CRACR2B TMEM80 IRF7 PHRF1 CD151 LOC143666 MIR210HG LOC101059906 POLR2L CHID1 RPLP2 CEND1 RNH1 DRD4 LMNTD2 TSPAN4 SCT HRAS MIR210 SNORA52 LRRC56 SLC25A22 CDHR5 RASSF7 TALDO1 DEAF1 PDDC1 EPS8L2

More Information

Additional Information:

For this assay, SNP(s) [rs78016272] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix structural protein