Hs03801055_cn

• Gene Symbol: LOC101059906
• Assay Reference Genome Location: Chr.11:528895 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 101059906
• Gene Name: collagen alpha-2(IV) chain-like
• Gene Aliases: -
• Location: Chr.11:528484-532263 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101059906	XM_003959933.4			XP_003959982.2

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	XM_011519875.2			XP_011518177.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv467634	Chr.11:511805 - 619789 on Build GRCh38	Loss	MIR210 HRAS MIR210HG LOC101059906 RASSF7 CDHR5 PHRF1 LMNTD2 LOC143666 LRRC56 IRF7
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	MIR210 PGGHG SIGIRR B4GALNT4 CDHR5 PHRF1 LMNTD2 LRRC56 PTDSS2 PKP3 ANO9 IFITM1 HRAS IFITM5 MIR210HG LOC101059906 RASSF7 IFITM3 RNH1 IFITM2 LOC143666 IRF7
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	MIR210 HRAS SCT MIR210HG LOC101059906 RASSF7 CDHR5 PHRF1 LMNTD2 LOC143666 LRRC56 IRF7
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MIR210 DEAF1 SCT PIDD1 AP2A2 TMEM80 B4GALNT4 CDHR5 PTDSS2 PKP3 MIR6744 LOC101927503 HRAS TSPAN4 LOC101059906 PNPLA2 TOLLIP PANO1 SNORA52 MUC5B CEND1 IRF7 RPLP2 MUC5AC CHID1 PDDC1 SIGIRR EPS8L2 PHRF1 LMNTD2 LRRC56 POLR2L ANO9 MIR210HG DRD4 RASSF7 RNH1 LOC171391 TALDO1 CD151 MUC6 SLC25A22 LOC143666 MUC2 CRACR2B
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MIR210 DEAF1 SCT PIDD1 AP2A2 TMEM80 CDHR5 PTDSS2 MIR6744 LOC101927503 HRAS TSPAN4 LOC101059906 PNPLA2 TOLLIP PANO1 SNORA52 MUC5B CEND1 IRF7 RPLP2 TOLLIP-AS1 MUC5AC CHID1 PDDC1 SIGIRR EPS8L2 PHRF1 LMNTD2 LRRC56 POLR2L ANO9 MIR210HG DRD4 RASSF7 RNH1 LOC171391 TALDO1 CD151 MUC6 SLC25A22 LOC143666 MUC2 CRACR2B
esv33673	Chr.11:528525 - 530251 on Build GRCh38	Gain	LOC101059906 LRRC56
esv3366265	Chr.11:528252 - 531250 on Build GRCh38	Duplication	LOC101059906 LRRC56
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	MIR210 DEAF1 SCT CDHR5 PHRF1 LMNTD2 LRRC56 PTDSS2 HRAS MIR210HG LOC101059906 DRD4 RASSF7 RNH1 LOC143666 IRF7
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	MIR210 DEAF1 SCT PIDD1 AP2A2 TMEM80 B4GALNT4 CDHR5 PTDSS2 PKP3 HRAS TSPAN4 LOC101059906 PNPLA2 PANO1 SNORA52 CEND1 IRF7 RPLP2 CHID1 PDDC1 SIGIRR EPS8L2 PHRF1 LMNTD2 LRRC56 POLR2L ANO9 MIR210HG DRD4 RASSF7 RNH1 LOC171391 TALDO1 CD151 SLC25A22 LOC143666 CRACR2B
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	MIR210 DEAF1 SCT PIDD1 TMEM80 CDHR5 PTDSS2 HRAS TSPAN4 LOC101059906 PNPLA2 PANO1 SNORA52 CEND1 IRF7 RPLP2 CHID1 PDDC1 EPS8L2 PHRF1 LMNTD2 LRRC56 POLR2L MIR210HG DRD4 RASSF7 RNH1 LOC171391 TALDO1 CD151 SLC25A22 LOC143666 CRACR2B

More Information

Additional Information:

For this assay, SNP(s) [rs78016272] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix structural protein