Hs03801119_cn

• Gene Symbol: LRRC56
• Assay Reference Genome Location: Chr.11:520986 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	XM_011519875.2			XP_011518177.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv467634	Chr.11:511805 - 619789 on Build GRCh38	Loss	LOC143666 CDHR5 RASSF7 PHRF1 MIR210HG LRRC56 LMNTD2 IRF7 LOC101059906 MIR210 HRAS
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	PGGHG PKP3 LOC143666 IFITM2 RASSF7 PHRF1 MIR210HG LRRC56 LMNTD2 IFITM5 PTDSS2 LOC101059906 MIR210 SIGIRR IFITM3 HRAS IFITM1 B4GALNT4 CDHR5 RNH1 ANO9 IRF7
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	TSPAN4 RPLP2 LOC171391 CRACR2B LMNTD2 LOC101059906 MUC2 SLC25A22 MIR6744 B4GALNT4 CDHR5 DEAF1 DRD4 TMEM80 MUC6 PKP3 EPS8L2 PIDD1 LOC143666 TOLLIP RASSF7 CHID1 PHRF1 MIR210HG LRRC56 PTDSS2 LOC101927503 MIR210 CD151 SIGIRR HRAS POLR2L PNPLA2 SCT AP2A2 PDDC1 PANO1 MUC5B RNH1 ANO9 MUC5AC IRF7 SNORA52 CEND1 TALDO1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	TSPAN4 RPLP2 LOC171391 CRACR2B LMNTD2 LOC101059906 MUC2 SLC25A22 MIR6744 CDHR5 DEAF1 DRD4 TMEM80 MUC6 EPS8L2 PIDD1 LOC143666 TOLLIP RASSF7 CHID1 PHRF1 MIR210HG LRRC56 PTDSS2 LOC101927503 MIR210 CD151 SIGIRR HRAS POLR2L PNPLA2 SCT AP2A2 PDDC1 TOLLIP-AS1 PANO1 MUC5B RNH1 ANO9 MUC5AC IRF7 SNORA52 CEND1 TALDO1
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LOC143666 RASSF7 PHRF1 MIR210HG LRRC56 LMNTD2 PTDSS2 LOC101059906 MIR210 HRAS SCT CDHR5 DEAF1 DRD4 RNH1 IRF7
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	TSPAN4 RPLP2 LOC171391 CRACR2B LMNTD2 LOC101059906 SLC25A22 B4GALNT4 CDHR5 DEAF1 DRD4 TMEM80 PKP3 EPS8L2 PIDD1 LOC143666 RASSF7 CHID1 PHRF1 MIR210HG LRRC56 PTDSS2 MIR210 CD151 SIGIRR HRAS POLR2L PNPLA2 SCT AP2A2 PDDC1 PANO1 RNH1 ANO9 IRF7 SNORA52 CEND1 TALDO1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	TSPAN4 RPLP2 LOC171391 CRACR2B LMNTD2 LOC101059906 SLC25A22 CDHR5 DEAF1 DRD4 TMEM80 EPS8L2 PIDD1 LOC143666 RASSF7 CHID1 PHRF1 MIR210HG LRRC56 PTDSS2 MIR210 CD151 HRAS POLR2L PNPLA2 SCT PDDC1 PANO1 RNH1 IRF7 SNORA52 CEND1 TALDO1

More Information

Additional Information:

For this assay, SNP(s) [rs74770539] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation