Hs03801119_cn

• Gene Symbol: LRRC56
• Assay Reference Genome Location: Chr.11:520986 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	XM_011519875.2			XP_011518177.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	LRRC56 LOC101059906 RASSF7 MIR210 MIR210HG LOC143666 HRAS LMNTD2 IRF7 PHRF1 CDHR5
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	PKP3 LOC101059906 PTDSS2 RASSF7 MIR210 MIR210HG ANO9 IFITM5 RNH1 PGGHG IFITM1 IRF7 PHRF1 SIGIRR LRRC56 B4GALNT4 LOC143666 IFITM2 HRAS LMNTD2 IFITM3 CDHR5
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PKP3 SLC25A22 TALDO1 PTDSS2 RASSF7 MIR210 MIR210HG POLR2L EPS8L2 RNH1 TSPAN4 TOLLIP PANO1 CEND1 CHID1 MIR6744 AP2A2 LOC143666 SNORA52 LMNTD2 RPLP2 MUC2 DEAF1 CDHR5 CRACR2B CD151 LOC101059906 PNPLA2 ANO9 MUC6 PDDC1 DRD4 IRF7 PHRF1 SIGIRR LRRC56 MUC5AC SCT TMEM80 LOC171391 MUC5B B4GALNT4 HRAS LOC101927503 PIDD1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	SLC25A22 TALDO1 PTDSS2 RASSF7 MIR210 MIR210HG POLR2L EPS8L2 RNH1 TSPAN4 TOLLIP PANO1 CEND1 CHID1 MIR6744 AP2A2 LOC143666 SNORA52 LMNTD2 RPLP2 MUC2 DEAF1 CDHR5 TOLLIP-AS1 CRACR2B CD151 LOC101059906 PNPLA2 ANO9 MUC6 PDDC1 DRD4 IRF7 PHRF1 SIGIRR LRRC56 MUC5AC SCT TMEM80 LOC171391 MUC5B HRAS LOC101927503 PIDD1
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PKP3 SLC25A22 TALDO1 PTDSS2 RASSF7 MIR210 MIR210HG POLR2L EPS8L2 RNH1 TSPAN4 PANO1 CEND1 CHID1 AP2A2 LOC143666 SNORA52 LMNTD2 RPLP2 DEAF1 CDHR5 CRACR2B CD151 LOC101059906 PNPLA2 ANO9 PDDC1 DRD4 IRF7 PHRF1 SIGIRR LRRC56 SCT TMEM80 LOC171391 B4GALNT4 HRAS PIDD1
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LOC101059906 PTDSS2 RASSF7 MIR210 MIR210HG RNH1 DRD4 IRF7 PHRF1 LRRC56 SCT LOC143666 HRAS LMNTD2 DEAF1 CDHR5
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	SLC25A22 TALDO1 PTDSS2 RASSF7 MIR210 MIR210HG POLR2L EPS8L2 RNH1 TSPAN4 PANO1 CEND1 CHID1 LOC143666 SNORA52 LMNTD2 RPLP2 DEAF1 CDHR5 CRACR2B CD151 LOC101059906 PNPLA2 PDDC1 DRD4 IRF7 PHRF1 LRRC56 SCT TMEM80 LOC171391 HRAS PIDD1

More Information

Additional Information:

For this assay, SNP(s) [rs74770539] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation