Hs03801164_cn

• Gene Symbol: LOC101059906
• Assay Reference Genome Location: Chr.11:529459 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 101059906
• Gene Name: collagen alpha-2(IV) chain-like
• Gene Aliases: -
• Location: Chr.11:528484-532263 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101059906	XM_003959933.4			XP_003959982.2

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	XM_011519875.2			XP_011518177.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	HRAS MIR210 IRF7 CDHR5 LRRC56 RASSF7 LOC143666 LOC101059906 MIR210HG PHRF1 LMNTD2
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	MIR210 IRF7 ANO9 SIGIRR IFITM1 RASSF7 IFITM5 MIR210HG B4GALNT4 LMNTD2 HRAS RNH1 PKP3 CDHR5 LRRC56 LOC143666 LOC101059906 PHRF1 IFITM3 PGGHG PTDSS2 IFITM2
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	HRAS MIR210 IRF7 CDHR5 LRRC56 SCT RASSF7 LOC143666 LOC101059906 MIR210HG PHRF1 LMNTD2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PIDD1 MIR210 TMEM80 IRF7 ANO9 SNORA52 SIGIRR TALDO1 PNPLA2 RASSF7 AP2A2 MIR6744 MUC5AC LMNTD2 LOC171391 RPLP2 POLR2L RNH1 LOC101927503 MUC2 CDHR5 LRRC56 LOC143666 MUC6 LOC101059906 CRACR2B CEND1 PDDC1 SLC25A22 SCT EPS8L2 MIR210HG B4GALNT4 HRAS DEAF1 PKP3 TOLLIP TSPAN4 CHID1 MUC5B CD151 DRD4 PHRF1 PANO1 PTDSS2
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	PIDD1 MIR210 TMEM80 IRF7 ANO9 SNORA52 SIGIRR TALDO1 PNPLA2 RASSF7 AP2A2 MIR6744 MUC5AC LMNTD2 LOC171391 RPLP2 POLR2L RNH1 TOLLIP-AS1 LOC101927503 MUC2 CDHR5 LRRC56 LOC143666 MUC6 LOC101059906 CRACR2B CEND1 PDDC1 SLC25A22 SCT EPS8L2 MIR210HG HRAS DEAF1 TOLLIP TSPAN4 CHID1 MUC5B CD151 DRD4 PHRF1 PANO1 PTDSS2
esv3366265	Chr.11:528252 - 531250 on Build GRCh38	Duplication	LRRC56 LOC101059906
esv33673	Chr.11:528525 - 530251 on Build GRCh38	Gain	LRRC56 LOC101059906
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PIDD1 MIR210 TMEM80 IRF7 ANO9 SNORA52 SIGIRR TALDO1 PNPLA2 RASSF7 AP2A2 LMNTD2 LOC171391 RPLP2 POLR2L RNH1 CDHR5 LRRC56 LOC143666 LOC101059906 CRACR2B CEND1 PDDC1 SLC25A22 SCT EPS8L2 MIR210HG B4GALNT4 HRAS DEAF1 PKP3 TSPAN4 CHID1 CD151 DRD4 PHRF1 PANO1 PTDSS2
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	MIR210 IRF7 SCT RASSF7 MIR210HG LMNTD2 HRAS DEAF1 RNH1 CDHR5 LRRC56 LOC143666 LOC101059906 DRD4 PHRF1 PTDSS2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PIDD1 MIR210 TMEM80 IRF7 SNORA52 TALDO1 PNPLA2 RASSF7 LMNTD2 LOC171391 RPLP2 POLR2L RNH1 CDHR5 LRRC56 LOC143666 LOC101059906 CRACR2B CEND1 PDDC1 SLC25A22 SCT EPS8L2 MIR210HG HRAS DEAF1 TSPAN4 CHID1 CD151 DRD4 PHRF1 PANO1 PTDSS2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix structural protein