Hs03801608_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:620726 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1			NP_001165439.1
	NM_021924.4			NP_068743.2
	NM_031264.3			NP_112554.2
	XM_006718253.3			XP_006718316.1
	XM_011520188.2			XP_011518490.1
	XM_011520189.2			XP_011518491.1
	XM_011520190.2			XP_011518492.1
	XM_011520191.2			XP_011518493.1
	AF258675.1			AAG16732.1
	AF258676.1			AAG16733.1
	AF276242.1			AAG30821.1
	AF301909.1			AAG33495.1
	AK000226.1			BAA91021.1
	AK000384.1			BAA91130.1
	AK300991.1
	AK308040.1
	AK309157.1
	AY358368.1			AAQ88734.1
	BC038405.1			AAH38405.1
	DQ491193.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1523n54	Chr.11:557342 - 656940 on Build GRCh38	Gain	CDHR5 SCT LMNTD2 RASSF7 LOC143666 DEAF1 MIR210 IRF7 PHRF1 DRD4 MIR210HG
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	CDHR5 SCT IRF7
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	CDHR5 HRAS SCT LMNTD2 RASSF7 LOC143666 MIR210 LRRC56 IRF7 PHRF1 LOC101059906 MIR210HG
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MUC5B TOLLIP PANO1 CHID1 MIR210 ANO9 LRRC56 POLR2L PHRF1 SIGIRR LOC101059906 MIR210HG CD151 RPLP2 TMEM80 EPS8L2 AP2A2 HRAS SLC25A22 LOC171391 CRACR2B IRF7 TSPAN4 MUC6 SCT LMNTD2 RASSF7 DEAF1 B4GALNT4 RNH1 MIR6744 PTDSS2 MUC2 PKP3 CDHR5 PIDD1 LOC143666 PNPLA2 PDDC1 MUC5AC TALDO1 CEND1 LOC101927503 SNORA52 DRD4
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	CDHR5 SCT DEAF1 IRF7 PHRF1 DRD4
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MUC5B TOLLIP PANO1 CHID1 MIR210 ANO9 LRRC56 POLR2L PHRF1 SIGIRR LOC101059906 TOLLIP-AS1 MIR210HG CD151 RPLP2 TMEM80 EPS8L2 AP2A2 HRAS SLC25A22 LOC171391 CRACR2B IRF7 TSPAN4 MUC6 SCT LMNTD2 RASSF7 DEAF1 RNH1 MIR6744 PTDSS2 MUC2 CDHR5 PIDD1 LOC143666 PNPLA2 PDDC1 MUC5AC TALDO1 CEND1 LOC101927503 SNORA52 DRD4
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	CDHR5 SCT DEAF1 IRF7 PHRF1 DRD4
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	SCT LMNTD2 RASSF7 DEAF1 MIR210 LRRC56 PHRF1 MIR210HG CDHR5 HRAS LOC143666 IRF7 DRD4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PANO1 CHID1 MIR210 ANO9 LRRC56 POLR2L PHRF1 SIGIRR LOC101059906 MIR210HG CD151 RPLP2 TMEM80 EPS8L2 AP2A2 HRAS SLC25A22 LOC171391 CRACR2B IRF7 TSPAN4 SCT LMNTD2 RASSF7 DEAF1 B4GALNT4 RNH1 PTDSS2 PKP3 CDHR5 PIDD1 LOC143666 PNPLA2 PDDC1 TALDO1 CEND1 SNORA52 DRD4
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	SCT LMNTD2 RASSF7 DEAF1 MIR210 LRRC56 RNH1 PHRF1 PTDSS2 LOC101059906 MIR210HG CDHR5 HRAS LOC143666 IRF7 DRD4
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PANO1 CHID1 MIR210 LRRC56 POLR2L PHRF1 LOC101059906 MIR210HG CD151 RPLP2 TMEM80 EPS8L2 HRAS SLC25A22 LOC171391 CRACR2B IRF7 TSPAN4 SCT LMNTD2 RASSF7 DEAF1 RNH1 PTDSS2 CDHR5 PIDD1 LOC143666 PNPLA2 PDDC1 TALDO1 CEND1 SNORA52 DRD4

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding