Hs03801608_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:620726 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1			NP_001165439.1
	NM_021924.4			NP_068743.2
	NM_031264.3			NP_112554.2
	XM_006718253.3			XP_006718316.1
	XM_011520188.2			XP_011518490.1
	XM_011520189.2			XP_011518491.1
	XM_011520190.2			XP_011518492.1
	XM_011520191.2			XP_011518493.1
	AF258675.1			AAG16732.1
	AF258676.1			AAG16733.1
	AF276242.1			AAG30821.1
	AF301909.1			AAG33495.1
	AK000226.1			BAA91021.1
	AK000384.1			BAA91130.1
	AK300991.1
	AK308040.1
	AK309157.1
	AY358368.1			AAQ88734.1
	BC038405.1			AAH38405.1
	DQ491193.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	IRF7 CDHR5 SCT
dgv1522n54	Chr.11:557342 - 656845 on Build GRCh38	Loss	IRF7 RASSF7 DRD4 MIR210 MIR210HG PHRF1 DEAF1 LMNTD2 LOC143666 CDHR5 SCT
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	IRF7 HRAS RASSF7 MIR210 MIR210HG LOC101059906 PHRF1 LRRC56 LMNTD2 LOC143666 CDHR5 SCT
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	RPLP2 CEND1 PTDSS2 PHRF1 CRACR2B DEAF1 SIGIRR LMNTD2 TALDO1 MUC6 RNH1 LOC171391 MUC5AC DRD4 MUC2 PANO1 CHID1 EPS8L2 LOC101059906 ANO9 LOC101927503 MUC5B PDDC1 IRF7 SLC25A22 TSPAN4 PIDD1 TMEM80 MIR6744 MIR210 MIR210HG PNPLA2 PKP3 POLR2L AP2A2 HRAS TOLLIP CD151 RASSF7 SNORA52 LRRC56 LOC143666 CDHR5 SCT B4GALNT4
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	IRF7 DRD4 PHRF1 DEAF1 CDHR5 SCT
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	RPLP2 CEND1 PTDSS2 PHRF1 CRACR2B DEAF1 SIGIRR LMNTD2 TALDO1 MUC6 RNH1 LOC171391 TOLLIP-AS1 MUC5AC DRD4 MUC2 PANO1 CHID1 EPS8L2 LOC101059906 ANO9 LOC101927503 MUC5B PDDC1 IRF7 SLC25A22 TSPAN4 PIDD1 TMEM80 MIR6744 MIR210 MIR210HG PNPLA2 POLR2L AP2A2 HRAS TOLLIP CD151 RASSF7 SNORA52 LRRC56 LOC143666 CDHR5 SCT
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	IRF7 DRD4 PHRF1 DEAF1 CDHR5 SCT
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	IRF7 MIR210 MIR210HG PHRF1 DEAF1 LMNTD2 HRAS RASSF7 DRD4 LRRC56 LOC143666 CDHR5 SCT
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	IRF7 MIR210 PTDSS2 MIR210HG PHRF1 DEAF1 LMNTD2 RNH1 HRAS RASSF7 DRD4 LOC101059906 LRRC56 LOC143666 CDHR5 SCT
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	RPLP2 CEND1 PTDSS2 PHRF1 CRACR2B DEAF1 SIGIRR LMNTD2 TALDO1 RNH1 LOC171391 DRD4 PANO1 CHID1 EPS8L2 LOC101059906 ANO9 PDDC1 IRF7 SLC25A22 TSPAN4 PIDD1 TMEM80 MIR210 MIR210HG PNPLA2 PKP3 POLR2L AP2A2 HRAS CD151 RASSF7 SNORA52 LRRC56 LOC143666 CDHR5 SCT B4GALNT4
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	RPLP2 CEND1 PTDSS2 PHRF1 CRACR2B DEAF1 LMNTD2 TALDO1 RNH1 LOC171391 DRD4 PANO1 CHID1 EPS8L2 LOC101059906 PDDC1 IRF7 SLC25A22 TSPAN4 PIDD1 TMEM80 MIR210 MIR210HG PNPLA2 POLR2L HRAS CD151 RASSF7 SNORA52 LRRC56 LOC143666 CDHR5 SCT

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding