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See other LRRC56 CNV Assays ›
Gene Symbol
LRRC56
Assay Reference Genome
Location

Chr.11:537479 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03802131_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 115399

Gene Name:

 leucine rich repeat containing 56

Gene Aliases:

 -

Location:

 Chr.11:518967-554916 on Build GRCh38

Assay Gene Location:

 Within Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LRRC56 NM_198075.3 NP_932341.1
XM_005252775.2 1 779 XP_005252832.1
XM_005252776.2 1 779 XP_005252833.1
XM_006718132.2 1 779 XP_006718195.1
XM_011519875.2 XP_011518177.1
XM_011519876.1 1 779 XP_011518178.1
XM_011519877.2 XP_011518179.1
XM_017017167.1 XP_016872656.1
XM_017017168.1 XP_016872657.1
AK024495.1 1 839 BAB15785.1
BC035937.1 AAH35937.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv552854 Chr.11:511805 - 619789 on Build GRCh38 Loss LMNTD2 HRAS MIR210 CDHR5 MIR210HG IRF7 RASSF7 PHRF1 LOC143666 LRRC56 LOC101059906
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss HRAS B4GALNT4 MIR210 PKP3 CDHR5 MIR210HG ANO9 PHRF1 LOC143666 IFITM1 LRRC56 LOC101059906 RNH1 PGGHG LMNTD2 IFITM3 IFITM2 IFITM5 IRF7 RASSF7 SIGIRR PTDSS2
nsv951270 Chr.11:528401 - 628100 on Build GRCh38 Deletion LMNTD2 HRAS SCT MIR210 CDHR5 MIR210HG IRF7 RASSF7 PHRF1 LOC143666 LRRC56 LOC101059906
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss PIDD1 HRAS CRACR2B PNPLA2 SCT DEAF1 MIR210 CD151 CDHR5 MIR210HG RPLP2 TMEM80 MUC5B TOLLIP SLC25A22 MUC5AC DRD4 LOC171391 MUC6 AP2A2 PANO1 TSPAN4 MIR6744 POLR2L B4GALNT4 PKP3 TALDO1 ANO9 PHRF1 LOC143666 LRRC56 LOC101059906 RNH1 CEND1 LMNTD2 EPS8L2 PDDC1 CHID1 IRF7 RASSF7 LOC101927503 MUC2 SNORA52 SIGIRR PTDSS2
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss PIDD1 HRAS CRACR2B PNPLA2 SCT DEAF1 MIR210 CD151 CDHR5 MIR210HG RPLP2 TMEM80 MUC5B TOLLIP SLC25A22 MUC5AC DRD4 LOC171391 MUC6 AP2A2 PANO1 TSPAN4 MIR6744 POLR2L TALDO1 ANO9 PHRF1 LOC143666 LRRC56 LOC101059906 RNH1 CEND1 TOLLIP-AS1 LMNTD2 EPS8L2 PDDC1 CHID1 IRF7 RASSF7 LOC101927503 MUC2 SNORA52 SIGIRR PTDSS2
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain HRAS SCT DEAF1 MIR210 CDHR5 MIR210HG PHRF1 LOC143666 LRRC56 DRD4 LMNTD2 IRF7 RASSF7
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion PIDD1 HRAS CRACR2B PNPLA2 SCT DEAF1 MIR210 CD151 CDHR5 MIR210HG RPLP2 TMEM80 SLC25A22 DRD4 LOC171391 AP2A2 PANO1 TSPAN4 POLR2L B4GALNT4 PKP3 TALDO1 ANO9 PHRF1 LOC143666 LRRC56 LOC101059906 RNH1 CEND1 LMNTD2 EPS8L2 PDDC1 CHID1 IRF7 RASSF7 SNORA52 SIGIRR PTDSS2
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain HRAS SCT DEAF1 MIR210 CDHR5 MIR210HG PHRF1 LOC143666 LRRC56 DRD4 LOC101059906 RNH1 LMNTD2 IRF7 RASSF7 PTDSS2
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion PIDD1 HRAS CRACR2B PNPLA2 SCT DEAF1 MIR210 CD151 CDHR5 MIR210HG RPLP2 TMEM80 SLC25A22 DRD4 LOC171391 PANO1 TSPAN4 POLR2L TALDO1 PHRF1 LOC143666 LRRC56 LOC101059906 RNH1 CEND1 LMNTD2 EPS8L2 PDDC1 CHID1 IRF7 RASSF7 SNORA52 PTDSS2
nsv552855 Chr.11:532923 - 545087 on Build GRCh38 Loss HRAS LRRC56

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More Information


Additional Information:

For this assay, SNP(s) [rs112687793] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

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