Hs03803210_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:854717 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	PIDD1 PNPLA2 CEND1 CHID1 PDDC1 CRACR2B CD151 PANO1 LOC171391 SLC25A22 RPLP2 POLR2L SNORA52 TSPAN4
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MUC5B CEND1 LOC143666 EPS8L2 ANO9 MIR210HG DRD4 CD151 LOC101059906 SLC25A22 SIGIRR RPLP2 SNORA52 B4GALNT4 TMEM80 TOLLIP CDHR5 TALDO1 PHRF1 PIDD1 PKP3 MIR6744 LOC101927503 LRRC56 PNPLA2 IRF7 CHID1 PDDC1 RNH1 MUC5AC RASSF7 MUC6 AP2A2 MIR210 MUC2 CRACR2B LMNTD2 PANO1 SCT LOC171391 DEAF1 POLR2L HRAS TSPAN4 PTDSS2
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	CHID1 TSPAN4 MUC6 AP2A2
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	PIDD1 PNPLA2 CEND1 CHID1 PDDC1 AP2A2 CRACR2B CD151 PANO1 LOC171391 SLC25A22 RPLP2 POLR2L SNORA52 TSPAN4
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MUC5B CEND1 LOC143666 EPS8L2 ANO9 MIR210HG DRD4 CD151 LOC101059906 SLC25A22 SIGIRR RPLP2 SNORA52 TMEM80 TOLLIP CDHR5 TALDO1 PHRF1 PIDD1 MIR6744 LOC101927503 LRRC56 PNPLA2 IRF7 CHID1 PDDC1 TOLLIP-AS1 RNH1 MUC5AC RASSF7 MUC6 AP2A2 MIR210 MUC2 CRACR2B LMNTD2 PANO1 SCT LOC171391 DEAF1 POLR2L HRAS TSPAN4 PTDSS2
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PIDD1 CD151 PNPLA2 CHID1 RPLP2 POLR2L SNORA52 TSPAN4 AP2A2 CRACR2B
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	PIDD1 PNPLA2 CEND1 CHID1 PDDC1 CRACR2B CD151 PANO1 LOC171391 SLC25A22 RPLP2 POLR2L SNORA52 TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CEND1 LOC143666 EPS8L2 ANO9 MIR210HG DRD4 CD151 LOC101059906 SLC25A22 SIGIRR RPLP2 SNORA52 B4GALNT4 TMEM80 CDHR5 TALDO1 PHRF1 PIDD1 PKP3 LRRC56 PNPLA2 IRF7 CHID1 PDDC1 RNH1 RASSF7 AP2A2 MIR210 CRACR2B LMNTD2 PANO1 SCT LOC171391 DEAF1 POLR2L HRAS TSPAN4 PTDSS2
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CD151 PNPLA2 CHID1 POLR2L TSPAN4 CRACR2B
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CEND1 LOC143666 EPS8L2 MIR210HG DRD4 CD151 LOC101059906 SLC25A22 RPLP2 SNORA52 TMEM80 CDHR5 TALDO1 PHRF1 PIDD1 LRRC56 PNPLA2 IRF7 CHID1 PDDC1 RNH1 RASSF7 MIR210 CRACR2B LMNTD2 PANO1 SCT LOC171391 DEAF1 POLR2L HRAS TSPAN4 PTDSS2
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	PIDD1 PNPLA2 CEND1 CHID1 PDDC1 CRACR2B CD151 PANO1 LOC171391 SLC25A22 RPLP2 POLR2L SNORA52 TSPAN4 TALDO1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding