Hs03803210_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:854717 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CEND1 SNORA52 CD151 RPLP2 CHID1 PDDC1 SLC25A22 LOC171391 PIDD1 PANO1 TSPAN4 CRACR2B PNPLA2 POLR2L
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CEND1 CDHR5 DRD4 HRAS MUC6 B4GALNT4 SNORA52 MUC5B LOC171391 PHRF1 RNH1 MIR210HG PANO1 TSPAN4 IRF7 DEAF1 MUC5AC PNPLA2 LOC101059906 LRRC56 POLR2L RASSF7 LOC143666 AP2A2 SCT EPS8L2 TOLLIP CD151 RPLP2 CHID1 PDDC1 SLC25A22 PKP3 SIGIRR LOC101927503 TALDO1 MUC2 PIDD1 LMNTD2 MIR210 PTDSS2 MIR6744 CRACR2B ANO9 TMEM80
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	AP2A2 MUC6 TSPAN4 CHID1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	AP2A2 CEND1 SNORA52 CD151 RPLP2 CHID1 PDDC1 SLC25A22 LOC171391 PIDD1 PANO1 TSPAN4 CRACR2B PNPLA2 POLR2L
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CEND1 CDHR5 DRD4 HRAS MUC6 SNORA52 MUC5B LOC171391 PHRF1 RNH1 MIR210HG PANO1 TSPAN4 IRF7 DEAF1 MUC5AC PNPLA2 LOC101059906 LRRC56 POLR2L RASSF7 TOLLIP-AS1 LOC143666 AP2A2 SCT EPS8L2 TOLLIP CD151 RPLP2 CHID1 PDDC1 SLC25A22 SIGIRR LOC101927503 TALDO1 MUC2 PIDD1 LMNTD2 MIR210 PTDSS2 MIR6744 CRACR2B ANO9 TMEM80
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 CHID1 POLR2L
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	AP2A2 PIDD1 SNORA52 TSPAN4 CRACR2B CD151 RPLP2 PNPLA2 CHID1 POLR2L
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CEND1 CDHR5 DRD4 HRAS B4GALNT4 SNORA52 LOC171391 PHRF1 RNH1 MIR210HG PANO1 TSPAN4 IRF7 DEAF1 PNPLA2 LOC101059906 LRRC56 POLR2L RASSF7 LOC143666 AP2A2 SCT EPS8L2 CD151 RPLP2 CHID1 PDDC1 SLC25A22 PKP3 SIGIRR TALDO1 PIDD1 LMNTD2 MIR210 PTDSS2 CRACR2B ANO9 TMEM80
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CEND1 SNORA52 CD151 RPLP2 CHID1 PDDC1 SLC25A22 LOC171391 PIDD1 PANO1 TSPAN4 CRACR2B PNPLA2 POLR2L
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CEND1 CDHR5 DRD4 HRAS SNORA52 LOC171391 PHRF1 RNH1 MIR210HG PANO1 TSPAN4 IRF7 DEAF1 PNPLA2 LOC101059906 LRRC56 POLR2L RASSF7 LOC143666 SCT EPS8L2 CD151 RPLP2 CHID1 PDDC1 SLC25A22 TALDO1 PIDD1 LMNTD2 MIR210 PTDSS2 CRACR2B TMEM80
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	TSPAN4 CRACR2B CD151 PNPLA2 CHID1 POLR2L
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CEND1 SNORA52 CD151 RPLP2 CHID1 PDDC1 SLC25A22 LOC171391 TALDO1 PIDD1 PANO1 TSPAN4 CRACR2B PNPLA2 POLR2L

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding