Hs03803381_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:863672 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK054788.1	1	401
	AK095212.1	2	1156
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625087	Chr.11:860117 - 882352 on Build GRCh38	Gain	TSPAN4 CHID1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	RPLP2 SNORA52 TSPAN4 CRACR2B CHID1 PDDC1 PANO1 POLR2L SLC25A22 PNPLA2 LOC171391 PIDD1 AP2A2 CD151 CEND1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MUC5AC LOC101927503 MUC2 RNH1 DEAF1 RASSF7 CRACR2B TMEM80 CHID1 MIR210 MUC5B PTDSS2 PANO1 IRF7 CDHR5 ANO9 PHRF1 HRAS TOLLIP-AS1 LOC171391 AP2A2 CEND1 LOC143666 SIGIRR RPLP2 SCT SNORA52 TSPAN4 EPS8L2 TALDO1 PDDC1 DRD4 POLR2L MIR6744 SLC25A22 MUC6 TOLLIP LMNTD2 LRRC56 PNPLA2 MIR210HG PIDD1 LOC101059906 CD151
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	RNH1 DEAF1 RASSF7 CRACR2B TMEM80 CHID1 MIR210 PTDSS2 PANO1 IRF7 CDHR5 ANO9 PKP3 PHRF1 HRAS LOC171391 AP2A2 CEND1 LOC143666 SIGIRR RPLP2 SCT SNORA52 TSPAN4 EPS8L2 TALDO1 B4GALNT4 PDDC1 DRD4 POLR2L SLC25A22 LMNTD2 LRRC56 PNPLA2 MIR210HG PIDD1 LOC101059906 CD151
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	RNH1 DEAF1 RASSF7 CRACR2B TMEM80 CHID1 MIR210 PTDSS2 PANO1 IRF7 CDHR5 PHRF1 HRAS LOC171391 CEND1 LOC143666 RPLP2 SCT SNORA52 TSPAN4 EPS8L2 TALDO1 PDDC1 DRD4 POLR2L SLC25A22 LMNTD2 LRRC56 PNPLA2 MIR210HG PIDD1 LOC101059906 CD151
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	RPLP2 SNORA52 TSPAN4 CRACR2B CHID1 PDDC1 PANO1 POLR2L SLC25A22 PNPLA2 LOC171391 PIDD1 CD151 CEND1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MUC5AC LOC101927503 MUC2 RNH1 DEAF1 RASSF7 CRACR2B TMEM80 CHID1 MIR210 MUC5B PTDSS2 PANO1 IRF7 CDHR5 ANO9 PKP3 PHRF1 HRAS LOC171391 AP2A2 CEND1 LOC143666 SIGIRR RPLP2 SCT SNORA52 TSPAN4 EPS8L2 TALDO1 B4GALNT4 PDDC1 DRD4 POLR2L MIR6744 SLC25A22 MUC6 TOLLIP LMNTD2 LRRC56 PNPLA2 MIR210HG PIDD1 LOC101059906 CD151
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	MUC6 TSPAN4 CHID1 AP2A2
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	POLR2L RPLP2 SNORA52 TSPAN4 PNPLA2 PIDD1 CRACR2B CHID1 AP2A2 CD151
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	RPLP2 SNORA52 TSPAN4 CRACR2B CHID1 PDDC1 PANO1 POLR2L SLC25A22 PNPLA2 LOC171391 PIDD1 CD151 CEND1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	POLR2L TSPAN4 PNPLA2 CRACR2B CHID1 CD151
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	RPLP2 SNORA52 TSPAN4 CRACR2B CHID1 TALDO1 PDDC1 PANO1 POLR2L SLC25A22 PNPLA2 LOC171391 PIDD1 CD151 CEND1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding