Hs03803381_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:863672 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK054788.1	1	401
	AK095212.1	2	1156
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625086	Chr.11:860117 - 882352 on Build GRCh38	Loss	TSPAN4 CHID1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CHID1 CEND1 LOC171391 POLR2L SLC25A22 RPLP2 SNORA52 TSPAN4 PDDC1 CRACR2B PIDD1 PANO1 PNPLA2 CD151 AP2A2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 CHID1 POLR2L
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LOC101927503 MIR6744 EPS8L2 MIR210 CHID1 CEND1 LOC171391 IRF7 SLC25A22 SNORA52 MUC5AC TMEM80 PDDC1 MIR210HG PANO1 TOLLIP MUC5B RASSF7 LRRC56 PHRF1 CD151 TOLLIP-AS1 MUC6 DRD4 TALDO1 RNH1 MUC2 SIGIRR DEAF1 SCT LOC101059906 POLR2L PTDSS2 RPLP2 TSPAN4 HRAS CDHR5 LOC143666 CRACR2B LMNTD2 ANO9 PIDD1 PNPLA2 AP2A2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	EPS8L2 MIR210 CHID1 CEND1 LOC171391 PKP3 IRF7 SLC25A22 SNORA52 TMEM80 PDDC1 MIR210HG PANO1 B4GALNT4 RASSF7 LRRC56 PHRF1 CD151 DRD4 TALDO1 RNH1 SIGIRR DEAF1 SCT LOC101059906 POLR2L PTDSS2 RPLP2 TSPAN4 HRAS CDHR5 LOC143666 CRACR2B LMNTD2 ANO9 PIDD1 PNPLA2 AP2A2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	EPS8L2 MIR210 CHID1 CEND1 LOC171391 IRF7 SLC25A22 SNORA52 TMEM80 PDDC1 MIR210HG PANO1 RASSF7 LRRC56 PHRF1 CD151 DRD4 TALDO1 RNH1 DEAF1 SCT LOC101059906 POLR2L PTDSS2 RPLP2 TSPAN4 HRAS CDHR5 LOC143666 CRACR2B LMNTD2 PIDD1 PNPLA2
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CHID1 CEND1 LOC171391 POLR2L SLC25A22 RPLP2 SNORA52 TSPAN4 PDDC1 CRACR2B PIDD1 PANO1 PNPLA2 CD151
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LOC101927503 MIR6744 EPS8L2 MIR210 CHID1 CEND1 LOC171391 PKP3 IRF7 SLC25A22 SNORA52 MUC5AC TMEM80 PDDC1 MIR210HG PANO1 B4GALNT4 TOLLIP MUC5B RASSF7 LRRC56 PHRF1 CD151 MUC6 DRD4 TALDO1 RNH1 MUC2 SIGIRR DEAF1 SCT LOC101059906 POLR2L PTDSS2 RPLP2 TSPAN4 HRAS CDHR5 LOC143666 CRACR2B LMNTD2 ANO9 PIDD1 PNPLA2 AP2A2
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	TSPAN4 CHID1 MUC6 AP2A2
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	SNORA52 TSPAN4 CHID1 CRACR2B PIDD1 PNPLA2 POLR2L CD151 AP2A2 RPLP2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CHID1 CEND1 LOC171391 POLR2L SLC25A22 RPLP2 SNORA52 TSPAN4 PDDC1 CRACR2B PIDD1 PANO1 PNPLA2 CD151
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	TSPAN4 CHID1 CRACR2B PNPLA2 POLR2L CD151
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	TALDO1 CHID1 CEND1 LOC171391 POLR2L SLC25A22 RPLP2 SNORA52 TSPAN4 PDDC1 CRACR2B PIDD1 PANO1 PNPLA2 CD151

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding