Hs03803819_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:848891 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	PIDD1 LOC171391 PNPLA2 POLR2L SNORA52 PANO1 CRACR2B CEND1 CD151 RPLP2 SLC25A22 PDDC1 CHID1 TSPAN4
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PIDD1 HRAS POLR2L SNORA52 CRACR2B CD151 DEAF1 LOC101059906 MUC6 LMNTD2 CHID1 MIR210HG MUC2 TSPAN4 PKP3 ANO9 TOLLIP LOC171391 PNPLA2 PTDSS2 DRD4 PANO1 MIR6744 RASSF7 AP2A2 CEND1 SIGIRR RPLP2 RNH1 SLC25A22 IRF7 PDDC1 PHRF1 CDHR5 TMEM80 MUC5B TALDO1 LOC143666 EPS8L2 LRRC56 MUC5AC LOC101927503 SCT MIR210 B4GALNT4
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	PIDD1 LOC171391 PNPLA2 POLR2L SNORA52 PANO1 CRACR2B AP2A2 CEND1 CD151 RPLP2 SLC25A22 PDDC1 CHID1 TSPAN4
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	PIDD1 HRAS POLR2L SNORA52 CRACR2B CD151 DEAF1 LOC101059906 MUC6 LMNTD2 CHID1 MIR210HG MUC2 TSPAN4 ANO9 TOLLIP TOLLIP-AS1 LOC171391 PNPLA2 PTDSS2 DRD4 PANO1 MIR6744 RASSF7 AP2A2 CEND1 SIGIRR RPLP2 RNH1 SLC25A22 IRF7 PDDC1 PHRF1 CDHR5 TMEM80 MUC5B TALDO1 LOC143666 EPS8L2 LRRC56 MUC5AC LOC101927503 SCT MIR210
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PIDD1 PNPLA2 CHID1 POLR2L SNORA52 TSPAN4 CRACR2B AP2A2 CD151 RPLP2
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PIDD1 HRAS POLR2L SNORA52 CRACR2B CD151 DEAF1 LOC101059906 LMNTD2 CHID1 MIR210HG TSPAN4 PKP3 ANO9 LOC171391 PNPLA2 PTDSS2 DRD4 PANO1 RASSF7 AP2A2 CEND1 SIGIRR RPLP2 RNH1 SLC25A22 IRF7 PDDC1 PHRF1 CDHR5 TMEM80 TALDO1 LOC143666 EPS8L2 LRRC56 SCT MIR210 B4GALNT4
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	PIDD1 LOC171391 PNPLA2 POLR2L SNORA52 PANO1 CRACR2B CEND1 CD151 RPLP2 SLC25A22 PDDC1 CHID1 TSPAN4
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PIDD1 HRAS POLR2L SNORA52 CRACR2B CD151 DEAF1 LOC101059906 LMNTD2 CHID1 MIR210HG TSPAN4 LOC171391 PNPLA2 PTDSS2 DRD4 PANO1 RASSF7 CEND1 RPLP2 RNH1 SLC25A22 IRF7 PDDC1 PHRF1 CDHR5 TMEM80 TALDO1 LOC143666 EPS8L2 LRRC56 SCT MIR210
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	PNPLA2 CHID1 POLR2L TSPAN4 CRACR2B CD151
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	PIDD1 LOC171391 PNPLA2 POLR2L SNORA52 PANO1 CRACR2B CEND1 CD151 RPLP2 SLC25A22 PDDC1 TALDO1 CHID1 TSPAN4

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding