Hs03803819_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:848891 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	LOC171391 PANO1 CEND1 TSPAN4 CHID1 CRACR2B PDDC1 PIDD1 SNORA52 RPLP2 POLR2L SLC25A22 PNPLA2 CD151
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LOC171391 TOLLIP DEAF1 RASSF7 PHRF1 ANO9 CEND1 CHID1 AP2A2 CRACR2B PKP3 TALDO1 RNH1 PIDD1 PTDSS2 RPLP2 SLC25A22 MUC5AC B4GALNT4 MUC6 MIR210 LRRC56 TMEM80 HRAS EPS8L2 LMNTD2 PANO1 LOC143666 TSPAN4 SIGIRR LOC101927503 MIR210HG PDDC1 SNORA52 DRD4 LOC101059906 POLR2L IRF7 MIR6744 PNPLA2 CD151 SCT MUC5B CDHR5 MUC2
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	LOC171391 PANO1 CEND1 TSPAN4 CHID1 AP2A2 CRACR2B PDDC1 PIDD1 SNORA52 RPLP2 POLR2L SLC25A22 PNPLA2 CD151
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LOC171391 TOLLIP DEAF1 RASSF7 PHRF1 ANO9 CEND1 CHID1 AP2A2 CRACR2B TALDO1 RNH1 PIDD1 PTDSS2 RPLP2 SLC25A22 MUC5AC MUC6 MIR210 LRRC56 TMEM80 TOLLIP-AS1 HRAS EPS8L2 LMNTD2 PANO1 LOC143666 TSPAN4 SIGIRR LOC101927503 MIR210HG PDDC1 SNORA52 DRD4 LOC101059906 POLR2L IRF7 MIR6744 PNPLA2 CD151 SCT MUC5B CDHR5 MUC2
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PIDD1 SNORA52 RPLP2 POLR2L PNPLA2 CD151 TSPAN4 CHID1 AP2A2 CRACR2B
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	LOC171391 PANO1 CEND1 TSPAN4 CHID1 CRACR2B PDDC1 PIDD1 SNORA52 RPLP2 POLR2L SLC25A22 PNPLA2 CD151
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LOC171391 DEAF1 RASSF7 PHRF1 ANO9 CEND1 CHID1 AP2A2 CRACR2B PKP3 TALDO1 RNH1 PIDD1 PTDSS2 RPLP2 SLC25A22 B4GALNT4 MIR210 LRRC56 TMEM80 HRAS EPS8L2 LMNTD2 PANO1 LOC143666 TSPAN4 SIGIRR MIR210HG PDDC1 SNORA52 DRD4 LOC101059906 POLR2L IRF7 PNPLA2 CD151 SCT CDHR5
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	POLR2L PNPLA2 CD151 TSPAN4 CHID1 CRACR2B
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LOC171391 DEAF1 RASSF7 PHRF1 CEND1 CHID1 CRACR2B TALDO1 RNH1 PIDD1 PTDSS2 RPLP2 SLC25A22 MIR210 LRRC56 TMEM80 HRAS EPS8L2 LMNTD2 PANO1 LOC143666 TSPAN4 MIR210HG PDDC1 SNORA52 DRD4 LOC101059906 POLR2L IRF7 PNPLA2 CD151 SCT CDHR5
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	LOC171391 PANO1 CEND1 TSPAN4 CHID1 CRACR2B TALDO1 PDDC1 PIDD1 SNORA52 RPLP2 POLR2L SLC25A22 PNPLA2 CD151

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding