Hs03803977_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:862618 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Exon 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1	4	355	NP_001020405.1
	NM_001025235.1	4	354	NP_001020406.1
	NM_001025236.1	4	359	NP_001020407.1
	NM_001025237.1	4	391	NP_001020408.1
	NM_001025238.1	3	241	NP_001020409.1
	NM_001025239.1	3	261	NP_001020410.1
	NM_003271.4	4	341	NP_003262.1
	XM_005253102.1	3	260	XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1	3	700	XP_011518638.1
	XM_011520337.2	3	562	XP_011518639.1
	XM_011520338.1	3	282	XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2	3	340	XP_011518642.1
	XM_011520341.2	3	261	XP_011518643.1
	AF022813.1	3	236	AAC51864.1
	AF054841.1	3	250	AAC69717.1
	AK095212.1	2	102
	AK126456.1
	AK291089.1	4	316
	AL543667.3	4	383
	BC000389.2	4	267	AAH00389.1
	BC019314.2	3	252	AAH19314.1
	BC093031.1	4	310	AAH93031.1
	BF530006.1	4	352
	BG752017.1	4	348
	BI820547.1	4	411
	BM755435.1
	BT006776.1	2	132	AAP35422.1
	CR457108.1	2	132	CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625086	Chr.11:860117 - 882352 on Build GRCh38	Loss	CHID1 TSPAN4
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CRACR2B PIDD1 CHID1 TSPAN4 POLR2L AP2A2 SNORA52 LOC171391 CD151 CEND1 PDDC1 RPLP2 PANO1 SLC25A22 PNPLA2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 TSPAN4 POLR2L
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CRACR2B LMNTD2 PIDD1 RASSF7 LRRC56 POLR2L LOC171391 MIR6744 ANO9 TALDO1 EPS8L2 CD151 MUC5AC MUC2 TMEM80 MIR210 PHRF1 RPLP2 PANO1 TOLLIP SCT DEAF1 PNPLA2 DRD4 PTDSS2 HRAS LOC101927503 MUC5B IRF7 CHID1 TSPAN4 AP2A2 SNORA52 SIGIRR LOC143666 TOLLIP-AS1 CEND1 PDDC1 RNH1 LOC101059906 SLC25A22 CDHR5 MUC6 MIR210HG
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CRACR2B B4GALNT4 LMNTD2 PIDD1 RASSF7 LRRC56 POLR2L LOC171391 ANO9 TALDO1 EPS8L2 CD151 TMEM80 MIR210 PHRF1 RPLP2 PANO1 SCT DEAF1 PNPLA2 DRD4 PTDSS2 HRAS IRF7 CHID1 TSPAN4 AP2A2 SNORA52 PKP3 SIGIRR LOC143666 CEND1 PDDC1 RNH1 LOC101059906 SLC25A22 CDHR5 MIR210HG
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CRACR2B LMNTD2 PIDD1 RASSF7 LRRC56 POLR2L LOC171391 TALDO1 EPS8L2 CD151 TMEM80 MIR210 PHRF1 RPLP2 PANO1 SCT DEAF1 PNPLA2 DRD4 PTDSS2 HRAS IRF7 CHID1 TSPAN4 SNORA52 LOC143666 CEND1 PDDC1 RNH1 LOC101059906 SLC25A22 CDHR5 MIR210HG
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CRACR2B PIDD1 CHID1 TSPAN4 POLR2L SNORA52 LOC171391 CD151 CEND1 PDDC1 RPLP2 PANO1 SLC25A22 PNPLA2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CRACR2B B4GALNT4 LMNTD2 PIDD1 RASSF7 LRRC56 POLR2L LOC171391 MIR6744 ANO9 TALDO1 EPS8L2 CD151 MUC5AC MUC2 TMEM80 MIR210 PHRF1 RPLP2 PANO1 TOLLIP SCT DEAF1 PNPLA2 DRD4 PTDSS2 HRAS LOC101927503 MUC5B IRF7 CHID1 TSPAN4 AP2A2 SNORA52 PKP3 SIGIRR LOC143666 CEND1 PDDC1 RNH1 LOC101059906 SLC25A22 CDHR5 MUC6 MIR210HG
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	CHID1 TSPAN4 AP2A2 MUC6
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CRACR2B CD151 PIDD1 CHID1 RPLP2 TSPAN4 POLR2L AP2A2 SNORA52 PNPLA2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CRACR2B PIDD1 CHID1 TSPAN4 POLR2L SNORA52 LOC171391 CD151 CEND1 PDDC1 RPLP2 PANO1 SLC25A22 PNPLA2
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CRACR2B CD151 CHID1 TSPAN4 POLR2L PNPLA2
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CRACR2B PIDD1 CHID1 TSPAN4 POLR2L SNORA52 LOC171391 TALDO1 CD151 CEND1 PDDC1 RPLP2 PANO1 SLC25A22 PNPLA2

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding