Hs03803977_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:862618 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Exon 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1	4	355	NP_001020405.1
	NM_001025235.1	4	354	NP_001020406.1
	NM_001025236.1	4	359	NP_001020407.1
	NM_001025237.1	4	391	NP_001020408.1
	NM_001025238.1	3	241	NP_001020409.1
	NM_001025239.1	3	261	NP_001020410.1
	NM_003271.4	4	341	NP_003262.1
	XM_005253102.1	3	260	XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1	3	700	XP_011518638.1
	XM_011520337.2	3	562	XP_011518639.1
	XM_011520338.1	3	282	XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2	3	340	XP_011518642.1
	XM_011520341.2	3	261	XP_011518643.1
	AF022813.1	3	236	AAC51864.1
	AF054841.1	3	250	AAC69717.1
	AK095212.1	2	102
	AK126456.1
	AK291089.1	4	316
	AL543667.3	4	383
	BC000389.2	4	267	AAH00389.1
	BC019314.2	3	252	AAH19314.1
	BC093031.1	4	310	AAH93031.1
	BF530006.1	4	352
	BG752017.1	4	348
	BI820547.1	4	411
	BM755435.1
	BT006776.1	2	132	AAP35422.1
	CR457108.1	2	132	CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625087	Chr.11:860117 - 882352 on Build GRCh38	Gain	TSPAN4 CHID1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	LOC171391 AP2A2 PIDD1 RPLP2 CHID1 SLC25A22 PDDC1 SNORA52 POLR2L CD151 CEND1 PNPLA2 TSPAN4 PANO1 CRACR2B
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	PTDSS2 RNH1 LOC171391 LRRC56 PIDD1 RPLP2 CHID1 TALDO1 SIGIRR POLR2L LOC143666 LOC101059906 CD151 SCT CEND1 MIR6744 MUC2 MUC6 MUC5B MUC5AC TOLLIP MIR210HG HRAS EPS8L2 AP2A2 TMEM80 CDHR5 DEAF1 MIR210 LMNTD2 SLC25A22 PDDC1 PHRF1 TOLLIP-AS1 SNORA52 DRD4 PNPLA2 TSPAN4 IRF7 RASSF7 PANO1 CRACR2B ANO9 LOC101927503
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PTDSS2 RNH1 LOC171391 LRRC56 PIDD1 RPLP2 CHID1 TALDO1 PKP3 SIGIRR POLR2L LOC143666 LOC101059906 CD151 SCT CEND1 B4GALNT4 MIR210HG HRAS EPS8L2 AP2A2 TMEM80 CDHR5 DEAF1 MIR210 LMNTD2 SLC25A22 PDDC1 PHRF1 SNORA52 DRD4 PNPLA2 TSPAN4 IRF7 RASSF7 PANO1 CRACR2B ANO9
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PTDSS2 RNH1 LOC171391 LRRC56 PIDD1 RPLP2 CHID1 TALDO1 POLR2L LOC143666 LOC101059906 CD151 SCT CEND1 MIR210HG HRAS EPS8L2 TMEM80 CDHR5 DEAF1 MIR210 LMNTD2 SLC25A22 PDDC1 PHRF1 SNORA52 DRD4 PNPLA2 TSPAN4 IRF7 RASSF7 PANO1 CRACR2B
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	LOC171391 PIDD1 RPLP2 CHID1 SLC25A22 PDDC1 SNORA52 POLR2L CD151 CEND1 PNPLA2 TSPAN4 PANO1 CRACR2B
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PTDSS2 RNH1 LOC171391 LRRC56 PIDD1 RPLP2 CHID1 TALDO1 PKP3 SIGIRR POLR2L LOC143666 LOC101059906 CD151 SCT CEND1 MIR6744 MUC2 MUC6 B4GALNT4 MUC5B MUC5AC TOLLIP MIR210HG HRAS EPS8L2 AP2A2 TMEM80 CDHR5 DEAF1 MIR210 LMNTD2 SLC25A22 PDDC1 PHRF1 SNORA52 DRD4 PNPLA2 TSPAN4 IRF7 RASSF7 PANO1 CRACR2B ANO9 LOC101927503
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	MUC6 TSPAN4 AP2A2 CHID1
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	SNORA52 POLR2L CD151 PNPLA2 TSPAN4 AP2A2 PIDD1 RPLP2 CRACR2B CHID1
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	LOC171391 PIDD1 RPLP2 CHID1 SLC25A22 PDDC1 SNORA52 POLR2L CD151 CEND1 PNPLA2 TSPAN4 PANO1 CRACR2B
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	POLR2L CD151 PNPLA2 TSPAN4 CRACR2B CHID1
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	LOC171391 PIDD1 RPLP2 CHID1 SLC25A22 TALDO1 PDDC1 SNORA52 POLR2L CD151 CEND1 PNPLA2 TSPAN4 PANO1 CRACR2B

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding