Hs03805004_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:855817 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CEND1 PIDD1 CHID1 SLC25A22 PANO1 CD151 POLR2L TSPAN4 LOC171391 RPLP2 CRACR2B SNORA52 PDDC1 PNPLA2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	SIGIRR EPS8L2 RNH1 CHID1 SLC25A22 ANO9 CD151 LMNTD2 MUC6 LRRC56 LOC171391 RPLP2 HRAS DEAF1 SNORA52 MUC2 RASSF7 TALDO1 LOC143666 LOC101059906 IRF7 MUC5B PKP3 CEND1 PIDD1 DRD4 SCT TMEM80 MIR210HG LOC101927503 PANO1 AP2A2 POLR2L MIR210 MUC5AC TSPAN4 B4GALNT4 CRACR2B TOLLIP PDDC1 MIR6744 PHRF1 PTDSS2 CDHR5 PNPLA2
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	MUC6 TSPAN4 CHID1 AP2A2
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CEND1 PIDD1 CHID1 SLC25A22 PANO1 CD151 AP2A2 POLR2L TSPAN4 LOC171391 RPLP2 CRACR2B SNORA52 PDDC1 PNPLA2
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	TOLLIP-AS1 SIGIRR EPS8L2 RNH1 CHID1 SLC25A22 ANO9 CD151 LMNTD2 MUC6 LRRC56 LOC171391 RPLP2 HRAS DEAF1 SNORA52 MUC2 RASSF7 TALDO1 LOC143666 LOC101059906 IRF7 MUC5B CEND1 PIDD1 DRD4 SCT TMEM80 MIR210HG LOC101927503 PANO1 AP2A2 POLR2L MIR210 MUC5AC TSPAN4 CRACR2B TOLLIP PDDC1 MIR6744 PHRF1 PTDSS2 CDHR5 PNPLA2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	POLR2L PIDD1 TSPAN4 RPLP2 CRACR2B CHID1 SNORA52 CD151 AP2A2 PNPLA2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	SIGIRR EPS8L2 RNH1 CHID1 SLC25A22 ANO9 CD151 LMNTD2 LRRC56 LOC171391 RPLP2 HRAS DEAF1 SNORA52 RASSF7 TALDO1 LOC143666 LOC101059906 IRF7 PKP3 CEND1 PIDD1 DRD4 SCT TMEM80 MIR210HG PANO1 AP2A2 POLR2L MIR210 TSPAN4 B4GALNT4 CRACR2B PDDC1 PHRF1 PTDSS2 CDHR5 PNPLA2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CEND1 PIDD1 CHID1 SLC25A22 PANO1 CD151 POLR2L TSPAN4 LOC171391 RPLP2 CRACR2B SNORA52 PDDC1 PNPLA2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	EPS8L2 RNH1 CHID1 SLC25A22 CD151 LMNTD2 LRRC56 LOC171391 RPLP2 HRAS DEAF1 SNORA52 RASSF7 TALDO1 LOC143666 LOC101059906 IRF7 CEND1 PIDD1 DRD4 SCT TMEM80 MIR210HG PANO1 POLR2L MIR210 TSPAN4 CRACR2B PDDC1 PHRF1 PTDSS2 CDHR5 PNPLA2
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	POLR2L TSPAN4 CRACR2B CHID1 CD151 PNPLA2
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CEND1 PIDD1 CHID1 SLC25A22 PANO1 CD151 POLR2L TSPAN4 LOC171391 RPLP2 CRACR2B SNORA52 PDDC1 TALDO1 PNPLA2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding