Hs03805004_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:855817 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CHID1 POLR2L PNPLA2 PDDC1 CEND1 PANO1 CD151 SNORA52 TSPAN4 LOC171391 PIDD1 CRACR2B SLC25A22 RPLP2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CHID1 RASSF7 PNPLA2 PDDC1 CEND1 CD151 MIR210HG B4GALNT4 LRRC56 ANO9 TOLLIP IRF7 MIR210 AP2A2 LOC101059906 TALDO1 LOC171391 CRACR2B RNH1 SCT CDHR5 RPLP2 MUC6 EPS8L2 PKP3 POLR2L PANO1 MUC5B DEAF1 SNORA52 MUC5AC MUC2 HRAS TSPAN4 DRD4 SIGIRR PIDD1 LOC143666 PHRF1 PTDSS2 LOC101927503 TMEM80 SLC25A22 LMNTD2 MIR6744
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	AP2A2 CHID1 TSPAN4 MUC6
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CHID1 POLR2L PNPLA2 PDDC1 CEND1 PANO1 CD151 SNORA52 AP2A2 TSPAN4 LOC171391 PIDD1 CRACR2B SLC25A22 RPLP2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 TSPAN4 POLR2L
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CHID1 RASSF7 PNPLA2 PDDC1 CEND1 CD151 MIR210HG LRRC56 ANO9 TOLLIP-AS1 TOLLIP IRF7 MIR210 AP2A2 LOC101059906 TALDO1 LOC171391 CRACR2B RNH1 SCT CDHR5 RPLP2 MUC6 EPS8L2 POLR2L PANO1 MUC5B DEAF1 SNORA52 MUC5AC MUC2 HRAS TSPAN4 DRD4 SIGIRR PIDD1 LOC143666 PHRF1 PTDSS2 LOC101927503 TMEM80 SLC25A22 LMNTD2 MIR6744
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	AP2A2 CHID1 TSPAN4 PIDD1 POLR2L CRACR2B PNPLA2 CD151 SNORA52 RPLP2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CHID1 POLR2L PNPLA2 PDDC1 CEND1 PANO1 CD151 SNORA52 TSPAN4 LOC171391 PIDD1 CRACR2B SLC25A22 RPLP2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CHID1 RASSF7 PNPLA2 PDDC1 CEND1 CD151 MIR210HG B4GALNT4 LRRC56 ANO9 IRF7 MIR210 AP2A2 LOC101059906 TALDO1 LOC171391 CRACR2B RNH1 SCT CDHR5 RPLP2 EPS8L2 PKP3 POLR2L PANO1 DEAF1 SNORA52 HRAS TSPAN4 DRD4 SIGIRR PIDD1 LOC143666 PHRF1 PTDSS2 TMEM80 SLC25A22 LMNTD2
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CHID1 TSPAN4 POLR2L CRACR2B PNPLA2 CD151
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CHID1 RASSF7 PNPLA2 PDDC1 CEND1 CD151 MIR210HG LRRC56 IRF7 MIR210 LOC101059906 TALDO1 LOC171391 CRACR2B RNH1 SCT CDHR5 RPLP2 EPS8L2 POLR2L PANO1 DEAF1 SNORA52 HRAS TSPAN4 DRD4 PIDD1 LOC143666 PHRF1 PTDSS2 TMEM80 SLC25A22 LMNTD2
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CHID1 POLR2L PNPLA2 PDDC1 CEND1 PANO1 CD151 SNORA52 TSPAN4 TALDO1 LOC171391 PIDD1 CRACR2B SLC25A22 RPLP2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding