Hs03805468_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:864059 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK054788.1	1	788
	AK095212.1	2	1543
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625087	Chr.11:860117 - 882352 on Build GRCh38	Gain	TSPAN4 CHID1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CEND1 SNORA52 RPLP2 SLC25A22 CHID1 PDDC1 PANO1 CD151 CRACR2B PNPLA2 PIDD1 TSPAN4 LOC171391 POLR2L AP2A2
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CEND1 SCT MIR210 MUC2 SNORA52 SLC25A22 LOC101927503 MIR6744 IRF7 LOC143666 LRRC56 CD151 PIDD1 EPS8L2 MUC6 RASSF7 TSPAN4 TOLLIP PTDSS2 LMNTD2 DRD4 MUC5B AP2A2 RPLP2 CDHR5 TOLLIP-AS1 LOC101059906 SIGIRR DEAF1 HRAS MUC5AC CHID1 PDDC1 PHRF1 RNH1 ANO9 MIR210HG TALDO1 PANO1 CRACR2B PNPLA2 TMEM80 LOC171391 POLR2L
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 CHID1 POLR2L
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CEND1 SCT MIR210 SNORA52 SLC25A22 IRF7 LOC143666 LRRC56 CD151 PKP3 PIDD1 EPS8L2 RASSF7 TSPAN4 PTDSS2 LMNTD2 DRD4 AP2A2 RPLP2 CDHR5 LOC101059906 SIGIRR DEAF1 HRAS CHID1 B4GALNT4 PDDC1 PHRF1 RNH1 ANO9 MIR210HG TALDO1 PANO1 CRACR2B PNPLA2 TMEM80 LOC171391 POLR2L
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CEND1 SCT MIR210 SNORA52 SLC25A22 IRF7 LOC143666 LRRC56 CD151 PIDD1 EPS8L2 RASSF7 TSPAN4 PTDSS2 LMNTD2 DRD4 RPLP2 CDHR5 LOC101059906 DEAF1 HRAS CHID1 PDDC1 PHRF1 RNH1 MIR210HG TALDO1 PANO1 CRACR2B PNPLA2 TMEM80 LOC171391 POLR2L
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CEND1 SNORA52 RPLP2 SLC25A22 CHID1 PDDC1 PANO1 CD151 CRACR2B PNPLA2 PIDD1 TSPAN4 LOC171391 POLR2L
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CEND1 SCT MIR210 MUC2 SNORA52 SLC25A22 LOC101927503 MIR6744 IRF7 LOC143666 LRRC56 CD151 PKP3 PIDD1 EPS8L2 MUC6 RASSF7 TSPAN4 TOLLIP PTDSS2 LMNTD2 DRD4 MUC5B AP2A2 RPLP2 CDHR5 LOC101059906 SIGIRR DEAF1 HRAS MUC5AC CHID1 B4GALNT4 PDDC1 PHRF1 RNH1 ANO9 MIR210HG TALDO1 PANO1 CRACR2B PNPLA2 TMEM80 LOC171391 POLR2L
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	MUC6 TSPAN4 CHID1 AP2A2
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CD151 CRACR2B PNPLA2 SNORA52 RPLP2 PIDD1 TSPAN4 CHID1 POLR2L AP2A2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CEND1 SNORA52 RPLP2 SLC25A22 CHID1 PDDC1 PANO1 CD151 CRACR2B PNPLA2 PIDD1 TSPAN4 LOC171391 POLR2L
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CD151 CRACR2B PNPLA2 TSPAN4 CHID1 POLR2L
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CEND1 SNORA52 RPLP2 SLC25A22 CHID1 PDDC1 TALDO1 PANO1 CD151 CRACR2B PNPLA2 PIDD1 TSPAN4 LOC171391 POLR2L

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding