Hs03805468_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:864059 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK054788.1	1	788
	AK095212.1	2	1543
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3625086	Chr.11:860117 - 882352 on Build GRCh38	Loss	CHID1 TSPAN4
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	RPLP2 AP2A2 CEND1 CD151 PNPLA2 PIDD1 POLR2L PANO1 SNORA52 SLC25A22 CRACR2B CHID1 LOC171391 PDDC1 TSPAN4
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 TSPAN4 POLR2L
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	ANO9 AP2A2 EPS8L2 CEND1 CD151 LOC143666 MUC6 SIGIRR PIDD1 SCT POLR2L DRD4 SNORA52 PHRF1 MUC5AC RASSF7 TMEM80 CHID1 LOC101927503 LRRC56 LOC171391 PDDC1 TSPAN4 MUC5B RPLP2 RNH1 IRF7 PNPLA2 CDHR5 TOLLIP MIR6744 MIR210HG MIR210 TALDO1 PANO1 SLC25A22 HRAS LMNTD2 LOC101059906 CRACR2B DEAF1 MUC2 TOLLIP-AS1 PTDSS2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	ANO9 AP2A2 EPS8L2 CEND1 CD151 LOC143666 SIGIRR PIDD1 SCT POLR2L DRD4 SNORA52 PHRF1 RASSF7 TMEM80 CHID1 LRRC56 B4GALNT4 LOC171391 PDDC1 TSPAN4 PKP3 RPLP2 RNH1 IRF7 PNPLA2 CDHR5 MIR210HG MIR210 TALDO1 PANO1 SLC25A22 HRAS LMNTD2 LOC101059906 CRACR2B DEAF1 PTDSS2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	EPS8L2 CEND1 CD151 LOC143666 PIDD1 SCT POLR2L DRD4 SNORA52 PHRF1 RASSF7 TMEM80 CHID1 LRRC56 LOC171391 PDDC1 TSPAN4 RPLP2 RNH1 IRF7 PNPLA2 CDHR5 MIR210HG MIR210 TALDO1 PANO1 SLC25A22 HRAS LMNTD2 LOC101059906 CRACR2B DEAF1 PTDSS2
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	RPLP2 CEND1 CD151 PNPLA2 PIDD1 POLR2L PANO1 SNORA52 SLC25A22 CRACR2B CHID1 LOC171391 PDDC1 TSPAN4
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	ANO9 AP2A2 EPS8L2 CEND1 CD151 LOC143666 MUC6 SIGIRR PIDD1 SCT POLR2L DRD4 SNORA52 PHRF1 MUC5AC RASSF7 TMEM80 CHID1 LOC101927503 LRRC56 B4GALNT4 LOC171391 PDDC1 TSPAN4 MUC5B PKP3 RPLP2 RNH1 IRF7 PNPLA2 CDHR5 TOLLIP MIR6744 MIR210HG MIR210 TALDO1 PANO1 SLC25A22 HRAS LMNTD2 LOC101059906 CRACR2B DEAF1 MUC2 PTDSS2
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	AP2A2 CHID1 MUC6 TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	RPLP2 AP2A2 SNORA52 CD151 PNPLA2 CRACR2B CHID1 PIDD1 TSPAN4 POLR2L
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	RPLP2 CEND1 CD151 PNPLA2 PIDD1 POLR2L PANO1 SNORA52 SLC25A22 CRACR2B CHID1 LOC171391 PDDC1 TSPAN4
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CD151 PNPLA2 CRACR2B CHID1 TSPAN4 POLR2L
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	RPLP2 CEND1 CD151 PNPLA2 TALDO1 PIDD1 POLR2L PANO1 SNORA52 SLC25A22 CRACR2B CHID1 LOC171391 PDDC1 TSPAN4

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding