Hs03805867_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:853940 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	SNORA52 PDDC1 SLC25A22 CD151 PANO1 TSPAN4 PIDD1 RPLP2 LOC171391 CHID1 POLR2L PNPLA2 CRACR2B CEND1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	SNORA52 LMNTD2 MUC6 TOLLIP DEAF1 PTDSS2 TSPAN4 TMEM80 MIR210HG MIR6744 MUC5AC LOC171391 MUC2 EPS8L2 CHID1 AP2A2 POLR2L TALDO1 SIGIRR MIR210 DRD4 HRAS LOC143666 CDHR5 IRF7 PDDC1 MUC5B SLC25A22 CD151 PHRF1 PANO1 PKP3 RASSF7 PIDD1 B4GALNT4 RPLP2 LOC101927503 SCT LRRC56 ANO9 RNH1 PNPLA2 CRACR2B CEND1 LOC101059906
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	TSPAN4 MUC6 CHID1 AP2A2
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	SNORA52 PDDC1 SLC25A22 CD151 PANO1 TSPAN4 PIDD1 RPLP2 LOC171391 CHID1 AP2A2 POLR2L PNPLA2 CRACR2B CEND1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	SNORA52 TOLLIP-AS1 LMNTD2 MUC6 TOLLIP DEAF1 PTDSS2 TSPAN4 TMEM80 MIR210HG MIR6744 MUC5AC LOC171391 MUC2 EPS8L2 CHID1 AP2A2 POLR2L TALDO1 SIGIRR MIR210 DRD4 HRAS LOC143666 CDHR5 IRF7 PDDC1 MUC5B SLC25A22 CD151 PHRF1 PANO1 RASSF7 PIDD1 RPLP2 LOC101927503 SCT LRRC56 ANO9 RNH1 PNPLA2 CRACR2B CEND1 LOC101059906
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 CHID1 POLR2L
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	SNORA52 TSPAN4 PIDD1 RPLP2 CHID1 CD151 AP2A2 POLR2L PNPLA2 CRACR2B
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	SNORA52 LMNTD2 DEAF1 PTDSS2 TSPAN4 TMEM80 MIR210HG LOC171391 EPS8L2 CHID1 AP2A2 POLR2L TALDO1 SIGIRR MIR210 DRD4 HRAS LOC143666 CDHR5 IRF7 PDDC1 SLC25A22 CD151 PHRF1 PANO1 PKP3 RASSF7 PIDD1 B4GALNT4 RPLP2 SCT LRRC56 ANO9 RNH1 PNPLA2 CRACR2B CEND1 LOC101059906
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	SNORA52 PDDC1 SLC25A22 CD151 PANO1 TSPAN4 PIDD1 RPLP2 LOC171391 CHID1 POLR2L PNPLA2 CRACR2B CEND1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	SNORA52 LMNTD2 DEAF1 PTDSS2 TSPAN4 TMEM80 MIR210HG LOC171391 EPS8L2 CHID1 POLR2L TALDO1 MIR210 DRD4 HRAS LOC143666 CDHR5 IRF7 PDDC1 SLC25A22 CD151 PHRF1 PANO1 RASSF7 PIDD1 RPLP2 SCT LRRC56 RNH1 PNPLA2 CRACR2B CEND1 LOC101059906
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	TSPAN4 CHID1 CD151 POLR2L PNPLA2 CRACR2B
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	SNORA52 PDDC1 SLC25A22 CD151 PANO1 TSPAN4 PIDD1 RPLP2 LOC171391 CHID1 POLR2L TALDO1 PNPLA2 CRACR2B CEND1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding