Hs03805867_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:853940 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CRACR2B CEND1 CD151 POLR2L LOC171391 SLC25A22 PIDD1 PNPLA2 TSPAN4 PANO1 SNORA52 PDDC1 RPLP2 CHID1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CRACR2B CEND1 AP2A2 MIR210HG HRAS CD151 MUC5B IRF7 MIR210 TOLLIP POLR2L LOC171391 SLC25A22 PTDSS2 TSPAN4 LRRC56 SNORA52 PDDC1 SCT TMEM80 DRD4 MIR6744 CDHR5 MUC2 CHID1 PKP3 RNH1 MUC6 LOC101059906 PHRF1 LMNTD2 B4GALNT4 LOC101927503 ANO9 PIDD1 DEAF1 PNPLA2 PANO1 LOC143666 SIGIRR TALDO1 MUC5AC RPLP2 EPS8L2 RASSF7
dgv175e214	Chr.11:851409 - 1043855 on Build GRCh38	Gain	TSPAN4 AP2A2 MUC6 CHID1
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CRACR2B CEND1 AP2A2 CD151 POLR2L LOC171391 SLC25A22 PIDD1 PNPLA2 TSPAN4 PANO1 SNORA52 PDDC1 RPLP2 CHID1
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 POLR2L CHID1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CRACR2B CEND1 AP2A2 MIR210HG HRAS CD151 MUC5B IRF7 MIR210 TOLLIP POLR2L LOC171391 SLC25A22 PTDSS2 TSPAN4 LRRC56 SNORA52 PDDC1 SCT TMEM80 DRD4 MIR6744 CDHR5 MUC2 CHID1 RNH1 MUC6 LOC101059906 PHRF1 LMNTD2 TOLLIP-AS1 LOC101927503 ANO9 PIDD1 DEAF1 PNPLA2 PANO1 LOC143666 SIGIRR TALDO1 MUC5AC RPLP2 EPS8L2 RASSF7
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CRACR2B TSPAN4 AP2A2 SNORA52 RPLP2 CD151 POLR2L PIDD1 CHID1 PNPLA2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CRACR2B CEND1 CD151 POLR2L LOC171391 SLC25A22 PIDD1 PNPLA2 TSPAN4 PANO1 SNORA52 PDDC1 RPLP2 CHID1
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CRACR2B CEND1 AP2A2 MIR210HG HRAS CD151 IRF7 MIR210 POLR2L LOC171391 SLC25A22 PTDSS2 TSPAN4 LRRC56 SNORA52 PDDC1 SCT TMEM80 DRD4 CDHR5 CHID1 PKP3 RNH1 LOC101059906 PHRF1 LMNTD2 B4GALNT4 ANO9 PIDD1 DEAF1 PNPLA2 PANO1 LOC143666 SIGIRR TALDO1 RPLP2 EPS8L2 RASSF7
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CRACR2B TSPAN4 CD151 POLR2L CHID1 PNPLA2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CRACR2B CEND1 MIR210HG HRAS CD151 IRF7 MIR210 POLR2L LOC171391 SLC25A22 PTDSS2 TSPAN4 LRRC56 SNORA52 PDDC1 SCT TMEM80 DRD4 CDHR5 CHID1 RNH1 LOC101059906 PHRF1 LMNTD2 PIDD1 DEAF1 PNPLA2 PANO1 LOC143666 TALDO1 RPLP2 EPS8L2 RASSF7
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CRACR2B CEND1 CD151 POLR2L LOC171391 SLC25A22 PIDD1 PNPLA2 TSPAN4 PANO1 TALDO1 SNORA52 PDDC1 RPLP2 CHID1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding