Hs03896676_cn

• Gene Symbol: FAM189A1
• Assay Reference Genome Location: Chr.15:29120327 on build GRCh38
• Cytoband: 15q13.1

Target Gene Details

• Entrez Gene ID: 23359
• Gene Name: family with sequence similarity 189 member A1
• Gene Aliases: TMEM228
• Location: Chr.15:29120252-29570723 on Build GRCh38
• Assay Gene Location: Within Exon 12

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM189A1	NM_015307.1	11	4632	NP_056122.1
	XM_011521407.2	12	4789	XP_011519709.1
	AB011146.1	8	4232	BAA25500.1
	AI364989.1	1	87

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1040778	Chr.15:28689598 - 30515727 on Build GRCh38	Loss	DKFZP434L187 WHAMMP2 GOLGA8T APBA2 LOC105370746 CHRFAM7A GOLGA8J NSMCE3 LOC100289656 LOC105370751 GOLGA8R ULK4P3 TJP1 GOLGA8M PDCD6IPP2 LOC101060569 LOC107984752 LOC100130111 GOLGA6L7P FAM189A1
nsv568678	Chr.15:29090260 - 29120363 on Build GRCh38	Loss	APBA2 FAM189A1
nsv515798	Chr.15:29068198 - 29146274 on Build GRCh38	Gain+Loss	APBA2 FAM189A1
nsv9228	Chr.15:29118128 - 29122991 on Build GRCh38	Loss	APBA2 FAM189A1
nsv471232	Chr.15:29087561 - 29139979 on Build GRCh38	Loss	APBA2 FAM189A1
esv2525505	Chr.15:29118530 - 29120341 on Build GRCh38	Deletion	FAM189A1
nsv527255	Chr.15:28754022 - 30074044 on Build GRCh38	Gain	WHAMMP2 TJP1 APBA2 PDCD6IPP2 NSMCE3 LOC107984752 LOC100130111 LOC100289656 GOLGA6L7P FAM189A1
nsv1039798	Chr.15:28724126 - 30158154 on Build GRCh38	Gain	WHAMMP2 GOLGA8T APBA2 GOLGA8J NSMCE3 LOC100289656 ULK4P3 TJP1 PDCD6IPP2 LOC107984752 LOC100130111 GOLGA6L7P FAM189A1
nsv522597	Chr.15:28724519 - 30074044 on Build GRCh38	Loss	WHAMMP2 TJP1 APBA2 PDCD6IPP2 NSMCE3 LOC107984752 LOC100130111 LOC100289656 GOLGA6L7P FAM189A1
nsv568675	Chr.15:29035149 - 29916451 on Build GRCh38	Gain	TJP1 APBA2 NSMCE3 LOC100130111 FAM189A1
nsv568679	Chr.15:29119123 - 29126370 on Build GRCh38	Loss	FAM189A1
nsv524362	Chr.15:29089598 - 29155854 on Build GRCh38	Loss	APBA2 FAM189A1

More Information

Additional Information:

For this assay, SNP(s) [rs80295632] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation