Hs03896676_cn

• Gene Symbol: FAM189A1
• Assay Reference Genome Location: Chr.15:29120327 on build GRCh38
• Cytoband: 15q13.1

Target Gene Details

• Entrez Gene ID: 23359
• Gene Name: family with sequence similarity 189 member A1
• Gene Aliases: TMEM228
• Location: Chr.15:29120252-29570723 on Build GRCh38
• Assay Gene Location: Within Exon 12

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM189A1	NM_015307.1	11	4632	NP_056122.1
	XM_011521407.2	12	4789	XP_011519709.1
	AB011146.1	8	4232	BAA25500.1
	AI364989.1	1	87

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1040778	Chr.15:28689598 - 30515727 on Build GRCh38	Loss	CHRFAM7A LOC105370746 FAM189A1 LOC105370751 LOC107984752 PDCD6IPP2 TJP1 LOC100130111 NSMCE3 GOLGA8R GOLGA6L7P APBA2 LOC101060569 GOLGA8M GOLGA8T ULK4P3 DKFZP434L187 LOC100289656 GOLGA8J WHAMMP2
nsv568678	Chr.15:29090260 - 29120363 on Build GRCh38	Loss	APBA2 FAM189A1
nsv9228	Chr.15:29118128 - 29122991 on Build GRCh38	Loss	APBA2 FAM189A1
nsv515798	Chr.15:29068198 - 29146274 on Build GRCh38	Gain+Loss	APBA2 FAM189A1
esv2525505	Chr.15:29118530 - 29120341 on Build GRCh38	Deletion	FAM189A1
nsv471232	Chr.15:29087561 - 29139979 on Build GRCh38	Loss	APBA2 FAM189A1
nsv527255	Chr.15:28754022 - 30074044 on Build GRCh38	Gain	APBA2 FAM189A1 LOC107984752 PDCD6IPP2 TJP1 LOC100130111 NSMCE3 LOC100289656 GOLGA6L7P WHAMMP2
esv2751526	Chr.15:28724519 - 30687025 on Build GRCh38	Loss	LOC100996413 LOC105370746 FAM189A1 LOC105370751 LOC101927579 ULK4P2 LOC107984752 PDCD6IPP2 TJP1 LOC100130111 GOLGA8R GOLGA6L7P GOLGA8H LOC101060569 GOLGA8T ARHGAP11B DKFZP434L187 WHAMMP2 CHRFAM7A LOC100288637 NSMCE3 APBA2 ULK4P3 LOC100289656 GOLGA8J
nsv1039798	Chr.15:28724126 - 30158154 on Build GRCh38	Gain	FAM189A1 LOC107984752 PDCD6IPP2 TJP1 LOC100130111 NSMCE3 GOLGA6L7P APBA2 GOLGA8T ULK4P3 LOC100289656 GOLGA8J WHAMMP2
nsv568679	Chr.15:29119123 - 29126370 on Build GRCh38	Loss	FAM189A1
nsv568675	Chr.15:29035149 - 29916451 on Build GRCh38	Gain	APBA2 FAM189A1 TJP1 LOC100130111 NSMCE3
nsv524362	Chr.15:29089598 - 29155854 on Build GRCh38	Loss	APBA2 FAM189A1

More Information

Additional Information:

For this assay, SNP(s) [rs80295632] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation